How to use the tifffile.tifffile.TiffFile function in tifffile
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pf4d / cslvr / varglas / data / data_factory.py View on Github 
@staticmethod
def get_bedmap2(thklim = 0.0):
filename = inspect.getframeinfo(inspect.currentframe()).filename
home = os.path.dirname(os.path.abspath(filename))
direc = home + '/antarctica/bedmap2/bedmap2_tiff/'
from tifffile.tifffile import TiffFile
B = TiffFile(direc + 'bedmap2_bed.tif')
S = TiffFile(direc + 'bedmap2_surface.tif')
H = TiffFile(direc + 'bedmap2_thickness.tif')
mask = TiffFile(direc + 'bedmap2_icemask_grounded_and_shelves.tif')
rock_mask = TiffFile(direc + 'bedmap2_rockmask.tif')
b_uncert = TiffFile(direc + 'bedmap2_grounded_bed_uncertainty.tif')
coverage = TiffFile(direc + 'bedmap2_coverage.tif')
gl04c_WGS84 = TiffFile(direc + 'gl04c_geiod_to_WGS84.tif')
B = B.asarray()
S = S.asarray()
H = H.asarray()
mask = mask.asarray()
rock_mask = rock_mask.asarray()
b_uncert = b_uncert.asarray()
coverage = coverage.asarray()
gl04c_WGS84 = gl04c_WGS84.asarray()
B = S - H
H[H == 32767] = thklimdef get_bedmap2(thklim = 0.0):
filename = inspect.getframeinfo(inspect.currentframe()).filename
home = os.path.dirname(os.path.abspath(filename))
direc = home + '/antarctica/bedmap2/bedmap2_tiff/'
from tifffile.tifffile import TiffFile
B = TiffFile(direc + 'bedmap2_bed.tif')
S = TiffFile(direc + 'bedmap2_surface.tif')
H = TiffFile(direc + 'bedmap2_thickness.tif')
mask = TiffFile(direc + 'bedmap2_icemask_grounded_and_shelves.tif')
rock_mask = TiffFile(direc + 'bedmap2_rockmask.tif')
b_uncert = TiffFile(direc + 'bedmap2_grounded_bed_uncertainty.tif')
coverage = TiffFile(direc + 'bedmap2_coverage.tif')
gl04c_WGS84 = TiffFile(direc + 'gl04c_geiod_to_WGS84.tif')
B = B.asarray()
S = S.asarray()
H = H.asarray()
mask = mask.asarray()
rock_mask = rock_mask.asarray()
b_uncert = b_uncert.asarray()
coverage = coverage.asarray()
gl04c_WGS84 = gl04c_WGS84.asarray()
B = S - H
H[H == 32767] = thklim
H[H <= thklim] = thklim
S = B + H
vara = dict() @staticmethod
def get_bedmap2(thklim = 0.0):
filename = inspect.getframeinfo(inspect.currentframe()).filename
home = os.path.dirname(os.path.abspath(filename))
direc = home + '/antarctica/bedmap2/bedmap2_tiff/'
from tifffile.tifffile import TiffFile
B = TiffFile(direc + 'bedmap2_bed.tif')
S = TiffFile(direc + 'bedmap2_surface.tif')
H = TiffFile(direc + 'bedmap2_thickness.tif')
mask = TiffFile(direc + 'bedmap2_icemask_grounded_and_shelves.tif')
rock_mask = TiffFile(direc + 'bedmap2_rockmask.tif')
b_uncert = TiffFile(direc + 'bedmap2_grounded_bed_uncertainty.tif')
coverage = TiffFile(direc + 'bedmap2_coverage.tif')
gl04c_WGS84 = TiffFile(direc + 'gl04c_geiod_to_WGS84.tif')
B = B.asarray()
S = S.asarray()
H = H.asarray()
mask = mask.asarray()
rock_mask = rock_mask.asarray()
b_uncert = b_uncert.asarray()
coverage = coverage.asarray()
gl04c_WGS84 = gl04c_WGS84.asarray()
B = S - H
H[H == 32767] = thklim
H[H <= thklim] = thklim @staticmethod
def get_bedmap2(thklim = 0.0):
filename = inspect.getframeinfo(inspect.currentframe()).filename
home = os.path.dirname(os.path.abspath(filename))
direc = home + '/antarctica/bedmap2/bedmap2_tiff/'
from tifffile.tifffile import TiffFile
B = TiffFile(direc + 'bedmap2_bed.tif')
S = TiffFile(direc + 'bedmap2_surface.tif')
H = TiffFile(direc + 'bedmap2_thickness.tif')
mask = TiffFile(direc + 'bedmap2_icemask_grounded_and_shelves.tif')
rock_mask = TiffFile(direc + 'bedmap2_rockmask.tif')
b_uncert = TiffFile(direc + 'bedmap2_grounded_bed_uncertainty.tif')
coverage = TiffFile(direc + 'bedmap2_coverage.tif')
gl04c_WGS84 = TiffFile(direc + 'gl04c_geiod_to_WGS84.tif')
B = B.asarray()
S = S.asarray()
H = H.asarray()
mask = mask.asarray()
rock_mask = rock_mask.asarray()
b_uncert = b_uncert.asarray()
coverage = coverage.asarray()
gl04c_WGS84 = gl04c_WGS84.asarray()
B = S - H @staticmethod
def get_bedmap2(thklim = 0.0):
filename = inspect.getframeinfo(inspect.currentframe()).filename
home = os.path.dirname(os.path.abspath(filename))
direc = home + '/antarctica/bedmap2/bedmap2_tiff/'
from tifffile.tifffile import TiffFile
B = TiffFile(direc + 'bedmap2_bed.tif')
S = TiffFile(direc + 'bedmap2_surface.tif')
H = TiffFile(direc + 'bedmap2_thickness.tif')
mask = TiffFile(direc + 'bedmap2_icemask_grounded_and_shelves.tif')
rock_mask = TiffFile(direc + 'bedmap2_rockmask.tif')
b_uncert = TiffFile(direc + 'bedmap2_grounded_bed_uncertainty.tif')
coverage = TiffFile(direc + 'bedmap2_coverage.tif')
gl04c_WGS84 = TiffFile(direc + 'gl04c_geiod_to_WGS84.tif')
B = B.asarray()
S = S.asarray()
H = H.asarray()
mask = mask.asarray()
rock_mask = rock_mask.asarray()
b_uncert = b_uncert.asarray()
coverage = coverage.asarray()
gl04c_WGS84 = gl04c_WGS84.asarray()
B = S - H
H[H == 32767] = thklim
H[H <= thklim] = thklim
S = B + H @staticmethod
def get_bedmap2(thklim = 0.0):
filename = inspect.getframeinfo(inspect.currentframe()).filename
home = os.path.dirname(os.path.abspath(filename))
direc = home + '/antarctica/bedmap2/bedmap2_tiff/'
from tifffile.tifffile import TiffFile
B = TiffFile(direc + 'bedmap2_bed.tif')
S = TiffFile(direc + 'bedmap2_surface.tif')
H = TiffFile(direc + 'bedmap2_thickness.tif')
mask = TiffFile(direc + 'bedmap2_icemask_grounded_and_shelves.tif')
rock_mask = TiffFile(direc + 'bedmap2_rockmask.tif')
b_uncert = TiffFile(direc + 'bedmap2_grounded_bed_uncertainty.tif')
coverage = TiffFile(direc + 'bedmap2_coverage.tif')
gl04c_WGS84 = TiffFile(direc + 'gl04c_geiod_to_WGS84.tif')
B = B.asarray()
S = S.asarray()
H = H.asarray()
mask = mask.asarray()
rock_mask = rock_mask.asarray()
b_uncert = b_uncert.asarray()
coverage = coverage.asarray()
gl04c_WGS84 = gl04c_WGS84.asarray() @staticmethod
def get_bedmap2(thklim = 0.0):
filename = inspect.getframeinfo(inspect.currentframe()).filename
home = os.path.dirname(os.path.abspath(filename))
direc = home + '/antarctica/bedmap2/bedmap2_tiff/'
from tifffile.tifffile import TiffFile
B = TiffFile(direc + 'bedmap2_bed.tif')
S = TiffFile(direc + 'bedmap2_surface.tif')
H = TiffFile(direc + 'bedmap2_thickness.tif')
mask = TiffFile(direc + 'bedmap2_icemask_grounded_and_shelves.tif')
rock_mask = TiffFile(direc + 'bedmap2_rockmask.tif')
b_uncert = TiffFile(direc + 'bedmap2_grounded_bed_uncertainty.tif')
coverage = TiffFile(direc + 'bedmap2_coverage.tif')
gl04c_WGS84 = TiffFile(direc + 'gl04c_geiod_to_WGS84.tif')
B = B.asarray()
S = S.asarray()
H = H.asarray()
mask = mask.asarray()
rock_mask = rock_mask.asarray()
b_uncert = b_uncert.asarray()
coverage = coverage.asarray()
gl04c_WGS84 = gl04c_WGS84.asarray()
B = S - H
H[H == 32767] = thklim
H[H <= thklim] = thklim
S = B + Hp = Proj(txt)
# save the data in matlab format :
vara['pyproj_Proj'] = p
vara['map_western_edge'] = west
vara['map_eastern_edge'] = east
vara['map_southern_edge'] = south
vara['map_northern_edge'] = north
vara['nx'] = nx
vara['ny'] = ny
# retrieve data :
vara['dataset'] = 'measures'
vara['continent'] = 'greenland'
for f in files:
data = TiffFile(direc + f + '.tif')
vara[f] = data.asarray()[::-1, :]
return vara @staticmethod
def get_bedmap2(thklim = 0.0):
filename = inspect.getframeinfo(inspect.currentframe()).filename
home = os.path.dirname(os.path.abspath(filename))
direc = home + '/antarctica/bedmap2/bedmap2_tiff/'
from tifffile.tifffile import TiffFile
B = TiffFile(direc + 'bedmap2_bed.tif')
S = TiffFile(direc + 'bedmap2_surface.tif')
H = TiffFile(direc + 'bedmap2_thickness.tif')
mask = TiffFile(direc + 'bedmap2_icemask_grounded_and_shelves.tif')
rock_mask = TiffFile(direc + 'bedmap2_rockmask.tif')
b_uncert = TiffFile(direc + 'bedmap2_grounded_bed_uncertainty.tif')
coverage = TiffFile(direc + 'bedmap2_coverage.tif')
gl04c_WGS84 = TiffFile(direc + 'gl04c_geiod_to_WGS84.tif')
B = B.asarray()
S = S.asarray()
H = H.asarray()
mask = mask.asarray()
rock_mask = rock_mask.asarray()
b_uncert = b_uncert.asarray()
coverage = coverage.asarray()
gl04c_WGS84 = gl04c_WGS84.asarray()
Popular tifffile functions
- tifffile.__version__
- tifffile.__version__.split
- tifffile.imread
- tifffile.imsave
- tifffile.imshow
- tifffile.imwrite
- tifffile.lazyattr
- tifffile.Record
- tifffile.stripnull
- tifffile.TIFFfile
- tifffile.TiffFile
- tifffile.tifffile
- tifffile.tifffile.asbool
- tifffile.tifffile.lazyattr
- tifffile.tifffile.stripnull
- tifffile.tifffile.TiffFile
- tifffile.TiffSequence._ParseError
- tifffile.TiffTag
- tifffile.TiffTag.Error
- tifffile.TiffWriter