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axes_scatter_TD,
True)
if len(genome_stats.mean_coverage) >= 1:
cov_per_plots = CovPercPlots(self.options)
cov_per_plots.plot_on_axes(self.fig,
genome_scaffold_stats,
highlight_scaffold_ids,
link_scaffold_ids,
genome_stats.mean_coverage,
[cov_perc],
axes_hist_cov_perc,
axes_scatter_cov_perc,
True)
mpld3.plugins.connect(self.fig, LinkedBrush(scatter))
self.fig.tight_layout(pad=1.0, w_pad=0.1, h_pad=0.1)
self.draw()
self.fig.clear()
mpld3.plugins.clear(self.fig)
mpld3.plugins.connect(self.fig, mpld3.plugins.Reset(), mpld3.plugins.BoxZoom(), mpld3.plugins.Zoom())
mpld3.plugins.connect(self.fig, mpld3.plugins.MousePosition(fontsize=12, fmt='.1f'))
self.fig.set_size_inches(self.options.width, self.options.height)
axis = self.fig.add_subplot(111)
scatter, _, _, _ = self.plot_on_axes(self.fig, genome_scaffold_stats,
highlight_scaffold_ids, link_scaffold_ids,
mean_gc, mean_coverage,
axis, True)
mpld3.plugins.connect(self.fig, LinkedBrush(scatter))
self.fig.tight_layout(pad=1, w_pad=1)
self.draw()
self.plot_on_axes(self.fig, 2, 1,
genome_scaffold_stats,
highlight_scaffold_ids,
link_scaffold_ids,
axis_pc3_pc2, True)
self.plot_on_axes(self.fig, 0, 2,
genome_scaffold_stats,
highlight_scaffold_ids,
link_scaffold_ids,
axis_pc1_pc3, True)
self.plot_variance(axis_variance)
mpld3.plugins.connect(self.fig, LinkedBrush(scatter))
self.fig.tight_layout(pad=1, w_pad=1)
self.draw()