How to use the pycellbase.commons.get function in pycellbase

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github opencb / cellbase / clients / python / pycellbase / restclient.py View on Github external
def _get(self, resource, query_id=None, options=None):
        """Queries the REST service and returns the result"""
        response = get(host=self._configuration.host,
                       port=self._configuration.port,
                       version=self._configuration.version,
                       species=self._configuration.species,
                       category=self._category,
                       subcategory=self._subcategory,
                       query_id=query_id,
                       resource=resource,
                       options=options)

        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def _get(self, resource, query_id=None, options=None):
        """Queries the REST service and returns the result"""
        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=self._configuration.species,
                       category=self._category,
                       subcategory=self._subcategory,
                       query_id=query_id,
                       resource=resource,
                       options=options)
        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def ping(self, **options):
        """Checks if service is alive"""
        # This particular REST endpoint follows the structure
        # /{version}/meta/ping
        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=None,
                       category=self._category,
                       subcategory=None,
                       resource='ping',
                       options=options)
        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def _post(self, resource, query_id=None, options=None, data=None):
        """Queries the REST service and returns the result"""
        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=self._configuration.species,
                       category=self._category,
                       subcategory=self._subcategory,
                       query_id=query_id,
                       resource=resource,
                       options=options,
                       method='post',
                       data=data)
        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def get_species(self, **options):
        """Returns available species"""
        # This particular REST endpoint follows the structure
        # /{version}/meta/species
        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=None,
                       category=self._category,
                       subcategory=None,
                       resource='species',
                       options=options)
        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def get_feature_class(self, **options):
        """Returns list of available regulatory feature classes"""
        # This particular REST endpoint follows the structure
        # /{version}/{species}/regulatory/featureClass
        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=self._configuration.species,
                       category=self._category,
                       subcategory=None,
                       resource='featureClass',
                       options=options)
        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def get_info(self, **options):
        """Returns general information"""
        # This particular REST endpoint follows the structure
        # /{version}/{species}/info
        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=self._configuration.species,
                       category=None,
                       subcategory=None,
                       resource='info',
                       options=options)
        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def get_versions(self, **options):
        # This particular REST endpoint follows the structure
        # /{version}/meta/{species}/versions
        """Returns source version metadata, including source urls"""
        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=None,
                       category=self._category,
                       subcategory=self._configuration.species,
                       resource='versions',
                       options=options)
        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def get_category(self, query_id, **options):
        # This particular REST endpoint follows the structure
        # /{version}/meta/{category}
        """Returns source version metadata, including source urls"""
        categories = ['feature', 'genomic', 'network', 'regulatory']
        if query_id not in categories:
            msg = 'Query has to be one of the following: ' + str(categories)
            raise ValueError(msg)

        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=None,
                       category=self._category,
                       subcategory=None,
                       resource=query_id,
                       options=options)
        return response
github opencb / cellbase / clients / python / pycellbase / cbrestclients.py View on Github external
def get_feature_type(self, **options):
        """Returns list of available regulatory feature types"""
        # This particular REST endpoint follows the structure
        # /{version}/{species}/regulatory/featureType
        response = get(session=self._session,
                       host=self._configuration.host,
                       version=self._configuration.version,
                       species=self._configuration.species,
                       category=self._category,
                       subcategory=None,
                       resource='featureType',
                       options=options)
        return response