How to use the pronto.TermList function in pronto
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HUPO-PSI / mzQC / pylib / MZQC / SemanticCheck.py View on Github 
def validate(self, mzqc: MzQcFile):
# Semantic validation of the JSON file.
# Load the mzqc file specific ontologies
cvs: Dict[str, TermList] = dict()
for cv in mzqc.controlled_vocabularies:
try:
cvs[cv.ref] = Ontology(cv.uri, False)
except:
SemanticError(f'Failed to load cv {cv.name} from {cv.uri}. Does {cv.ref} exist?')
# For all cv terms involved:
for cv_parameter in self._get_cv_parameters(mzqc):
# Verify that cvRefs are valid.
if cv_parameter.cvRef not in cvs.keys():
raise SemanticError(f'Unknown CV reference <{cv_parameter.cv_ref}> in '
f'element `{str(type(cv_parameter))}`')
# Verify that the term exists in the CV.
cv_term = cvs[cv_parameter.cvRef].get(cv_parameter.accession)
if cv_term is None:
