How to use the opentrons.instruments.P10_Multi function in opentrons

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github Opentrons / Protocols / protocols / 0cb5e5-part3 / ngs_prep_pt3.ot2.py View on Github external
number_of_samples: int = 96,
        p10_multi_mount: StringSelection('right', 'left') = 'right',
        p50_multi_mount: StringSelection('left', 'right') = 'left',
        dual_index: StringSelection('yes', 'no') = 'yes',
        reagent_starting_column: int = 1
):
    # checks
    if number_of_samples > 96 or number_of_samples < 1:
        raise Exception('Invalid number of samples')
    if p10_multi_mount == p50_multi_mount:
        raise Exception('Invalid pipette mount combination')
    if reagent_starting_column > 7:
        raise Exception('Invlaid reagent starting column')

    # pipettes
    m10 = instruments.P10_Multi(mount=p10_multi_mount, tip_racks=tips10)
    m50 = instruments.P50_Multi(mount=p50_multi_mount, tip_racks=tips50)

    # reagent setup
    [fs2e1, fs1, rs, ss1, ss2e2, pcre3] = [
        reagent_plate.rows('A')[ind]
        for ind in range(reagent_starting_column-1, reagent_starting_column+5)
    ]
    [pb, eb, ps] = [trough.wells(ind) for ind in range(3)]
    etoh = [chan for chan in trough.wells('A4', length=4)]
    etoh_waste = [chan for chan in trough.wells('A8', length=4)]

    # sample setup
    num_cols = math.ceil(number_of_samples/8)
    samples_TM = plate_TM.rows('A')[:num_cols]
    samples_2 = plate_2.rows('A')[:num_cols]
    samples_mag = magplate.rows('A')[:num_cols]
github Opentrons / Protocols / protocols / 1623 / Omega_betaM2350_BWE.ot2.py View on Github external
for slot in slots]
        pipette = instruments.P50_Single(
            mount=pipette_axis,
            tip_racks=tipracks)

    elif pipette_type == 'p10_Single':
        tipracks = [labware.load('opentrons_96_tiprack_10ul ', slot)
                    for slot in slots]
        pipette = instruments.P10_Single(
            mount=pipette_axis,
            tip_racks=tipracks)

    elif pipette_type == 'p10_Multi':
        tipracks = [labware.load('opentrons_96_tiprack_10ul ', slot)
                    for slot in slots]
        pipette = instruments.P10_Multi(
            mount=pipette_axis,
            tip_racks=tipracks)

    elif pipette_type == 'p50_Multi':
        tipracks = [labware.load('opentrons_96_tiprack_300ul', slot)
                    for slot in slots]
        pipette = instruments.P50_Multi(
            mount=pipette_axis,
            tip_racks=tipracks)

    elif pipette_type == 'p300_Multi':
        tipracks = [labware.load('opentrons_96_tiprack_300ul', slot)
                    for slot in slots]
        pipette = instruments.P300_Multi(
            mount=pipette_axis,
            tip_racks=tipracks)
github Opentrons / Protocols / protocols / 1358-andersen-lab-northwestern-university-part3 / nebnext_ultra_II_part3.ot2.py View on Github external
diameter=5.5,
            depth=20.75)

# labware setup
pcr_plate = labware.load(pcr_plate_name, '1')
trough = labware.load('trough-12row', '2')
trough2 = labware.load('trough-12row', '3')
mag_plate = labware.load(mag_plate_name, '4')

tipracks_m10 = [labware.load('tiprack-10ul', slot)
                for slot in ['10', '11']]
tipracks_m300 = [labware.load('tiprack-200ul', slot)
                 for slot in ['5', '6', '7', '8', '9']]

# pipette setup
m10 = instruments.P10_Multi(
    mount='left',
    tip_racks=tipracks_m10)

m300 = instruments.P300_Multi(
    mount='right',
    tip_racks=tipracks_m300)

# reagent setup
oligo_beads = trough.wells('A1')
ethanol = trough.wells('A2')
TE_buffer = trough.wells('A3')


m300_tip_count = 0
m10_tip_count = 0
pcr_loc = [col for col in pcr_plate.cols()]
github Opentrons / Protocols / protocols / customizable_serial_dilution / customizable_serial_dilution.ot2.py View on Github external
mount='left',
            tip_racks=tiprack)
    elif pipette_type == 'p50-Single':
        pipette = instruments.P50_Single(
            mount='left',
            tip_racks=tiprack)
    elif pipette_type == 'p300-Multi':
        pipette = instruments.P300_Multi(
            mount='left',
            tip_racks=tiprack)
    elif pipette_type == 'p50-Multi':
        pipette = instruments.P50_Multi(
            mount='left',
            tip_racks=tiprack)
    elif pipette_type == 'p10-Multi':
        pipette = instruments.P10_Multi(
            mount='left',
            tip_racks=tiprack)
    elif pipette_type == 'p10-Single':
        pipette = instruments.P10_Single(
            mount='left',
            tip_racks=tiprack)

    new_tip = 'never' if tip_use_strategy == 'use one tip' else 'always'

    transfer_volume = total_mixing_volume/dilution_factor
    buffer_volume = total_mixing_volume - transfer_volume

    tip_max = 12*len(tiprack) if pip_name == 'Multi' else 96*len(tiprack)
    tip_count = 0

    def pick_up():
github Opentrons / Protocols / protocols / 719-m-dna-isolation-from-patrick-donley / dna_isolation_duke.ot2.py View on Github external
tiprack_p10 = labware.load('tiprack-10ul', '4')
tiprack_p300_1 = labware.load('tiprack-200ul', '3')
tiprack_p300_2 = labware.load('tiprack-200ul', '5')
tiprack_p300_3 = labware.load('tiprack-200ul', '6')
tiprack_p300_4 = labware.load('tiprack-200ul', '7')
tiprack_p300_5 = labware.load('tiprack-200ul', '8')
tiprack_p300_6 = labware.load('tiprack-200ul', '9')
liquid_trash = labware.load('point', '10')

# variables and reagents setup
water = trough.well('A1')  # location of water in trough
fbs = trough.well('A8')  # location of fbs in trough
np = trough.well('A9')  # location of nanoparticles in trough

# instrument setup
m10 = instruments.P10_Multi(
    mount='left',
    tip_racks=[tiprack_p10]
)

m300 = instruments.P300_Multi(
    mount='right',
    tip_racks=[tiprack_p300_1, tiprack_p300_2, tiprack_p300_3, tiprack_p300_4,
               tiprack_p300_5, tiprack_p300_6]
)


def check_trough_volume(water_vol):
    global water
    # upper limit of liquid volume in trough is max_volume - 1 mL
    trough_vol = water.max_volume()-1000
    if water_vol > trough_vol:
github Opentrons / Protocols / protocols / qiaseq-pt-3 / pt3_cleanup_of_dna.ot2.py View on Github external
num_sample_cols = math.ceil(number_of_samples/8)
    rxn_samples = rxn_plate.rows('A')[:num_sample_cols]
    elution_samples = elution_plate.rows('A')[:num_sample_cols]

    # pipettes
    tips300 = [labware.load('opentrons_96_tiprack_300ul', slot)
               for slot in ['4', '5', '6', '7']]
    tips10 = [labware.load('opentrons_96_tiprack_10ul', slot)
              for slot in ['8', '9', '10', '11']]

    m300 = instruments.P300_Multi(
        mount=p300_mount,
        tip_racks=tips300
    )
    m10 = instruments.P10_Multi(
        mount=p10_mount,
        tip_racks=tips10
    )

    tip10_count = 0
    tip300_count = 0
    tip10_max = len(tips10)*12
    tip300_max = len(tips300)*12

    def pick_up(pip):
        nonlocal tip10_count
        nonlocal tip300_count

        if pip == m10:
            if tip10_count == tip10_max:
                robot.pause('Replace 10ul tipracks before resuming.')
github Opentrons / Protocols / protocols / 1546-cytena-gmbh-part1 / DNA_normalization.ot2.py View on Github external
grid=(12, 8),
        spacing=(9, 9),
        diameter=6.3,
        depth=10.8,
        volume=350
    )

# load labware
trough = labware.load('trough-12row', '1')
PCR_plate = labware.load(PCR_plate_name, '2')
flat_plate = labware.load(flat_plate_name, '3')
tips10 = labware.load('tiprack-10ul', '7')
tips300 = labware.load('opentrons-tiprack-300ul', '8')

# pipettes
m10 = instruments.P10_Multi(mount='right', tip_racks=[tips10])
m300 = instruments.P300_Multi(mount='left', tip_racks=[tips300])

# reagent setup
solution = trough.wells('A8')

# transfer working solution to flat plate
m300.distribute(75, solution, [well.top() for well in flat_plate.rows('A')])

# transfer DNA from PCR plate to corresponding well of flat plate
for source_col, dest_col in zip(PCR_plate.columns('2', to='12'),
                                flat_plate.columns('2', to='12')):
    source = source_col[0]
    dest = dest_col[0]

    m10.pick_up_tip()
    m10.transfer(3, source, dest, blow_out=True, new_tip='never')
github Opentrons / Protocols / protocols / 1416-quentis-therapeutics / protein-based_compound_screening.ot2.py View on Github external
# labware setup
plate_1 = labware.load(plate_name, '1')
plate_2 = labware.load(plate_name, '2')
for plate in [plate_1, plate_2]:
    for well in plate.wells():
        well.properties['height'] = 11.6

trough = labware.load('trough-12row', '4')

tipracks_10 = [labware.load('tiprack-10ul', slot)
               for slot in ['3', '5', '7', '8']]
tiprack_50 = labware.load('opentrons-tiprack-300ul', '6')

# instrument setup
m10 = instruments.P10_Multi(
    mount='left',
    tip_racks=tipracks_10)

m50 = instruments.P50_Multi(
    mount='right',
    tip_racks=[tiprack_50])

# reagent setup
DMSO = trough.wells('A1')
buff = trough.wells('A2')
protein = trough.wells('A3')
substrate = trough.wells('A4')

# add DMSO to column 2-16
m50.distribute(
    10,
github Opentrons / Protocols / protocols / media_exchange / Media_Exchange.ot2.py View on Github external
"""
tiprack = labware.load('tiprack-10ul', '2')


"""
C
"""
plate_48 = labware.load('48-well-plate', '3', share=True)
plate_96 = labware.load('96-flat', '3', share=True)


p10single = instruments.P10_Single(
    mount='right',
    tip_racks=[tiprack])

p10multi = instruments.P10_Multi(
    mount='left',
    tip_racks=[tiprack])


def run_custom_protocol(plate_size: int=96):
    if plate_size == 96:
        plate = plate_96
        pipette = p10multi
    else:
        plate = plate_48
        pipette = p10single

    pipette.transfer(
        5,
        plate.cols(),
        output.cols(),
github Opentrons / Protocols / protocols / 0cb5e5-part4 / ngs_prep_pt4.ot2.py View on Github external
number_of_samples: int = 96,
        p10_multi_mount: StringSelection('right', 'left') = 'right',
        p50_multi_mount: StringSelection('left', 'right') = 'left',
        dual_index: StringSelection('yes', 'no') = 'yes',
        reagent_starting_column: int = 1
):
    # checks
    if number_of_samples > 96 or number_of_samples < 1:
        raise Exception('Invalid number of samples')
    if p10_multi_mount == p50_multi_mount:
        raise Exception('Invalid pipette mount combination')
    if reagent_starting_column > 7:
        raise Exception('Invlaid reagent starting column')

    # pipettes
    m10 = instruments.P10_Multi(mount=p10_multi_mount, tip_racks=tips10)
    m50 = instruments.P50_Multi(mount=p50_multi_mount, tip_racks=tips50)

    # reagent setup
    [fs2e1, fs1, rs, ss1, ss2e2, pcre3] = [
        reagent_plate.rows('A')[ind]
        for ind in range(reagent_starting_column-1, reagent_starting_column+5)
    ]
    [pb, eb, ps] = [trough.wells(ind) for ind in range(3)]
    etoh = [chan for chan in trough.wells('A4', length=4)]
    etoh_waste = [chan for chan in trough.wells('A8', length=4)]
    liquid_waste = trough.wells('A12')

    # sample setup
    num_cols = math.ceil(number_of_samples/8)
    samples_TM = plate_TM.rows('A')[:num_cols]
    samples_2 = plate_2.rows('A')[:num_cols]