How to use the manubot.manuscript.replace_citations_strings_with_ids function in manubot

def test_replace_citations_strings_with_ids():
    """
    Test that text does not get converted to:
    
    > our new Manubot tool [@cTN2TQIL-rootstock; @cTN2TQIL] for automating
    manuscript generation.
    
    See https://github.com/greenelab/manubot/issues/9
    """
    string_to_id = {
        '@url:https://github.com/greenelab/manubot': 'cTN2TQIL',
        '@url:https://github.com/greenelab/manubot-rootstock': '1B7Y2HVtw',
    }
    text = 'our new Manubot tool [@url:https://github.com/greenelab/manubot-rootstock; @url:https://github.com/greenelab/manubot] for automating manuscript generation.'
    text = replace_citations_strings_with_ids(text, string_to_id)
    assert '[@1B7Y2HVtw; @cTN2TQIL]' in text

def prepare_manuscript(args):
    """
    Compile manuscript, creating manuscript.md and references.json as inputs
    for pandoc.
    """
    text = get_text(args.content_directory)
    citation_df = get_citation_df(args, text)

    generate_csl_items(args, citation_df)

    citation_string_to_id = collections.OrderedDict(
        zip(citation_df.string, citation_df.citation_id))
    text = replace_citations_strings_with_ids(text, citation_string_to_id)

    metadata, variables = get_metadata_and_variables(args)
    variables['manuscript_stats'] = get_manuscript_stats(text, citation_df)
    with args.variables_path.open('w') as write_file:
        json.dump(variables, write_file, indent=2)
        write_file.write('\n')

    text = template_with_jinja2(text, variables)

    # Write manuscript for pandoc
    with args.manuscript_path.open('w') as write_file:
        yaml.dump(metadata, write_file, default_flow_style=False,
                  explicit_start=True, explicit_end=True)
        write_file.write('\n')
        write_file.write(text)