How to use the duecredit.log.lgr.debug function in duecredit

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github duecredit / duecredit / duecredit / injections / View on Github external
def _process_delayed_injection(self, mod_name):
        lgr.debug("%sProcessing delayed injection for %s", self._import_level_prefix, mod_name)
        inj_mod_name = self._delayed_injections[mod_name]
        assert(not hasattr(self._orig_import, '__duecredited__'))
            inj_mod_name_full = "duecredit.injections." + inj_mod_name
            lgr.log(3, "Importing %s", inj_mod_name_full)
            # Mark it is a processed already, to avoid its processing etc
            inj_mod = self._orig_import(inj_mod_name_full,
        except Exception as e:
            if os.environ.get('DUECREDIT_ALLOW_FAIL', False):
            raise RuntimeError("Failed to import %s: %r" % (inj_mod_name, e))
        # TODO: process min/max_versions etc
        assert(hasattr(inj_mod, 'inject'))
        lgr.log(3, "Calling injector of %s", inj_mod_name_full)
github duecredit / duecredit / duecredit / injections / View on Github external
# so we point to an object within the mod
                    parent, obj_name, obj = find_object(mod, obj_path)
                except (KeyError, AttributeError) as e:
                    lgr.warning("Could not find %s in module %s: %s" % (obj_path, mod, e))

            # there could be multiple per func
            lgr.log(4, "Considering %d records for decoration of %s:%s", len(obj_entry_records), parent, obj_name)
            for obj_entry_record in obj_entry_records:
                entry = obj_entry_record['entry']
                # Add entry explicitly
                if obj_path:  # if not entire module -- decorate!
                    decorator = self._collector.dcite(entry.get_key(), **obj_entry_record['kwargs'])
                    lgr.debug("Decorating %s:%s with %s", parent, obj_name, decorator)
                    obj_decorated = decorator(obj)
                    setattr(parent, obj_name, obj_decorated)
                    # override previous obj with the decorated one if there are multiple decorators
                    obj = obj_decorated
                    lgr.log(3, "Citing directly %s:%s since obj_path is empty", parent, obj_name)
                    self._collector.cite(entry.get_key(), **obj_entry_record['kwargs'])

        lgr.log(3, "Done processing injections for module %s", mod_name)
github duecredit / duecredit / duecredit / injections / View on Github external
def __del__(self):
        if lgr:
            lgr.debug("%s is asked to be deleted", self)
            if self._active:
        except:  # noqa: E722
            super(self.__class__, self).__del__()
        except:  # noqa: E722
github duecredit / duecredit / duecredit / View on Github external
def import_doi(doi, sleep=0.5, retries=10):
    import requests
    cached = get_doi_cache_file(doi)

    if exists(cached):
        with open(cached) as f:
            doi =
            if PY2:
                return doi.decode('utf-8')
            return doi

    # else -- fetch it
    headers = {'Accept': 'application/x-bibtex; charset=utf-8'}
    url = '' + doi
    while retries > 0:
        lgr.debug("Submitting GET to %s with headers %s", url, headers)
        r = requests.get(url, headers=headers)
        r.encoding = 'UTF-8'
        bibtex = r.text.strip()
        if bibtex.startswith('@'):
            # no more retries necessary
        lgr.warning("Failed to obtain bibtex from, retrying...")
        time.sleep(sleep)  # give some time to the server
        retries -= 1
    status_code = r.status_code
    if not bibtex.startswith('@'):
        raise ValueError('Query %(url)s for BibTeX for a DOI %(doi)s (wrong doi?) has failed. '
                         'Response code %(status_code)d. '
                         #'BibTeX response was: %(bibtex)s'
                         % locals())
    if not exists(cached):
github duecredit / duecredit / duecredit / injections / View on Github external
def _populate_delayed_injections(self):
        self._delayed_injections = {}
        for inj_mod_name in get_modules_for_injection():
            mod_name = inj_mod_name[4:]
            lgr.debug("Adding delayed injection for %s", (mod_name,))
            self._delayed_injections[mod_name] = inj_mod_name