1. Advisor
  2. cutadapt
  3. functions
  4. cutadapt.seqio.find_fastq_record_end
View all cutadapt analysis

How to use the cutadapt.seqio.find_fastq_record_end function in cutadapt

To help you get started, we’ve selected a few cutadapt examples, based on popular ways it is used in public projects.

Secure your code as it's written. Use Snyk Code to scan source code in minutes - no build needed - and fix issues immediately.

github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
def test_fastq_record_end():
	assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16
github marcelm / cutadapt / tests / test_seqio.py View on Github external
assert find_fastq_record_end(b'') == 0
	assert find_fastq_record_end(b'A\n') == 0
	assert find_fastq_record_end(b'A\nB') == 0
	assert find_fastq_record_end(b'A\nB\n') == 0
	assert find_fastq_record_end(b'A\nB\nC') == 0
	assert find_fastq_record_end(b'A\nB\nC\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\n') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH') == 0
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\n') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI') == 16
	assert find_fastq_record_end(b'A\nB\nC\nD\nE\nF\nG\nH\nI\n') == 16

cutadapt

Adapter trimming and other preprocessing of high-throughput sequencing reads

GitHub
MIT
Latest version published 2 months ago

Package Health Score

81 / 100
Full package analysis

Popular cutadapt functions

Similar packages