How to use the cutadapt.__main__.parse_lengths function in cutadapt
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marcelm / cutadapt / tests / test_main.py View on Github 
def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")def test_parse_lengths():
assert parse_lengths("25") == (25, )
assert parse_lengths("17:25") == (17, 25)
assert parse_lengths("25:") == (25, None)
assert parse_lengths(":25") == (None, 25)
with pytest.raises(CommandLineError):
parse_lengths("1:2:3")
with pytest.raises(CommandLineError):
parse_lengths("a:2")
with pytest.raises(CommandLineError):
parse_lengths("a")
with pytest.raises(CommandLineError):
parse_lengths("2:a")
with pytest.raises(CommandLineError):
parse_lengths(":")cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Package Health Score
82 / 100Popular cutadapt functions
- cutadapt.__main__.main
- cutadapt.__main__.parse_lengths
- cutadapt.adapters.BackAdapter
- cutadapt.adapters.PrefixAdapter
- cutadapt.adapters.warn_duplicate_adapters
- cutadapt.align.Aligner
- cutadapt.colorspace.encode
- cutadapt.modifiers.AdapterCutter
- cutadapt.modifiers.ModificationInfo
- cutadapt.modifiers.QualityTrimmer
- cutadapt.modifiers.Shortener
- cutadapt.modifiers.UnconditionalCutter
- cutadapt.parser.AdapterParser
- cutadapt.parser.AdapterSpecification
- cutadapt.seqio.FastaReader
- cutadapt.seqio.FastaWriter
- cutadapt.seqio.FastqReader
- cutadapt.seqio.find_fastq_record_end
- cutadapt.seqio.open
- cutadapt.seqio.Sequence