How to use the tslearn.metrics.SoftDTW function in tslearn

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github hnolCol / instantclue / modules / dialogs / compare_groups.py View on Github external
def calcualteTDW(self,row,groupColumns):
		
		data = [row[col].values.astype(np.float) for col in groupColumns]
		#data = [x[~np.isnan(x)] for x in data]
		distMatrix = cdist(data[0].reshape(len(groupColumns[0]),1),data[1].reshape(len(groupColumns[1]),1))
		return SoftDTW(distMatrix).compute()		
github rtavenar / tslearn / tslearn / deprecated.py View on Github external
def _func(self, Z):
            # Compute objective value and grad at Z.

            Z = Z.reshape(self.barycenter_.shape)

            G = numpy.zeros_like(Z)

            obj = 0

            for i in range(len(self._X_fit)):
                D = SquaredEuclidean(Z, to_time_series(self._X_fit[i],
                                                       remove_nans=True))
                sdtw = SoftDTW(D, gamma=self.gamma)
                value = sdtw.compute()
                E = sdtw.grad()
                G_tmp = D.jacobian_product(E)
                G += self.weights[i] * G_tmp
                obj += self.weights[i] * value

            return obj, G.ravel()
github rtavenar / tslearn / tslearn / barycenters.py View on Github external
def _softdtw_func(Z, X, weights, barycenter, gamma):
    # Compute objective value and grad at Z.

    Z = Z.reshape(barycenter.shape)
    G = numpy.zeros_like(Z)
    obj = 0

    for i in range(len(X)):
        D = SquaredEuclidean(Z, X[i])
        sdtw = SoftDTW(D, gamma=gamma)
        value = sdtw.compute()
        E = sdtw.grad()
        G_tmp = D.jacobian_product(E)
        G += weights[i] * G_tmp
        obj += weights[i] * value

    return obj, G.ravel()