View tsinfer on Snyk Open Source Advisor

Package Health Score

59 / 100

security
Security review needed
popularity
Limited
maintenance
Sustainable
community
Sustainable

Popularity

Limited

Total Weekly Downloads (267)

GitHub Stars: 48
Forks: 12
Contributors: 20

Direct Usage Popularity

The PyPI package tsinfer receives a total of 267 downloads a week. As such, we scored tsinfer popularity level to be Limited.

Based on project statistics from the GitHub repository for the PyPI package tsinfer, we found that it has been starred 48 times.

The download numbers shown are the average weekly downloads from the last 6 weeks.

Security

Security review needed

Security and license risk for latest version

Release Date: Apr 19, 2023
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
3
L
License Risk: 1
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

GPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

We found a way for you to contribute to the project! Looks like tsinfer is missing a security policy.

A security vulnerability was detected in an indirect dependency that is added to your project when the latest version of tsinfer is installed.

We highly advise you to review these security issues.

You can connect your project's repository to Snyk to stay up to date on security alerts and receive automatic fix pull requests.

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Maintenance

Sustainable

Commit Frequency

Open Issues: 91
Open PR: 7
Last Release: 8 months ago
Last Commit: 3 months ago

Further analysis of the maintenance status of tsinfer based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Sustainable.

We found that tsinfer demonstrates a positive version release cadence with at least one new version released in the past 12 months.

In the past month we didn't find any pull request activity or change in issues status has been detected for the GitHub repository.

Community

Sustainable

Readme: Yes
Contributing.md: No
Code of Conduct: Yes
Contributors: 20
Funding: No

With more than 10 contributors for the tsinfer repository, this is possibly a sign for a growing and inviting community.

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Package

Python Versions Compatibility: >=3.7

Age: 6 years
Latest Release: 8 months ago
Dependencies: 11 Direct / 23 Total
Versions: 10
Maintainers: 2
Wheels: Linux, macOS, Windows

Not sure how to use tsinfer?

To help you get started, we've collected the most common ways that tsinfer is being used within popular public projects.

tskit-dev / tsinfer / tests / test_formats.py View on Github

def test_provenance(self):
        sample_data, ancestors = self.get_example_data(10, 10, 40)
        ancestor_data = tsinfer.AncestorData(sample_data)
        self.verify_data_round_trip(sample_data, ancestor_data, ancestors)
        self.assertEqual(ancestor_data.num_provenances, sample_data.num_provenances + 1)

        timestamp = ancestor_data.provenances_timestamp[-1]
        iso = datetime.datetime.now().isoformat()
        self.assertEqual(timestamp.split("T")[0], iso.split("T")[0])
        record = ancestor_data.provenances_record[-1]
        self.assertEqual(record["software"]["name"], "tsinfer")
        a = list(ancestor_data.provenances())
        self.assertEqual(a[-1][0], timestamp)
        self.assertEqual(a[-1][1], record)
        for j, (timestamp, record) in enumerate(sample_data.provenances()):
            self.assertEqual(timestamp, a[j][0])
            self.assertEqual(record, a[j][1])

View more ways to use tsinfer

tsinfer dependencies

attrs daiquiri humanize lmdb numcodecs numpy six sortedcontainers tqdm tskit zarr

FAQs

What is tsinfer?

Infer tree sequences from genetic variation data. Visit Snyk Advisor to see a full health score report for tsinfer, including popularity, security, maintenance & community analysis.

Is tsinfer popular?

The python package tsinfer receives a total of 267 weekly downloads. As such, tsinfer popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is tsinfer well maintained?

We found indications that tsinfer maintenance is sustainable demonstrating some project activity. We saw a total of 20 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is tsinfer safe to use?

While scanning the latest version of tsinfer, we found that a security review is needed. A total of 3 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 8 October-2023, at 07:54 (UTC).

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tsinfer

Infer tree sequences from genetic variation data. For more information about how to use this package see README

Ensure you're using the healthiest python packages

Package Health Score

Popularity

Total Weekly Downloads (267)

Direct Usage Popularity

Security

Security and license risk for latest version

Non-Permissive License

Maintenance

Commit Frequency

Community

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Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Package

Not sure how to use tsinfer?

tsinfer

tsinfer dependencies

FAQs

What is tsinfer?

Is tsinfer popular?

Is tsinfer well maintained?

Is tsinfer safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Total Weekly Downloads (267)

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Not sure how to use tsinfer?

tsinfer

tsinfer dependencies

FAQs

What is tsinfer?

Is tsinfer popular?

Is tsinfer well maintained?

Is tsinfer safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues