How to use the spikeinterface.widgets.plot_timeseries function in spikeinterface

To help you get started, we’ve selected a few spikeinterface examples, based on popular ways it is used in public projects.

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github SpikeInterface / spikeinterface / tests / test_imports.py View on Github external
import spikeinterface.widgets as sw

    # se
    recording, sorting_true = se.example_datasets.toy_example(duration=60, num_channels=4, seed=0)

    # st
    rec_f = st.preprocessing.bandpass_filter(recording)

    # ss
    print(ss.available_sorters())

    # sc
    sc.compare_two_sorters(sorting_true, sorting_true)

    # sw
    sw.plot_timeseries(rec_f)
github SpikeInterface / spikeinterface / examples / modules / widgets / plot_1_rec_gallery.py View on Github external
import spikeinterface.extractors as se
import spikeinterface.widgets as sw

##############################################################################
# First, let's create a toy example with the `extractors` module:

recording, sorting = se.example_datasets.toy_example(duration=10, num_channels=4, seed=0)

##############################################################################
# plot_timeseries()
# ~~~~~~~~~~~~~~~~~

w_ts = sw.plot_timeseries(recording)

w_ts1 = sw.plot_timeseries(recording, trange=[5, 8])

recording.set_channel_groups(channel_ids=recording.get_channel_ids(), groups=[0, 0, 1, 1])
w_ts2 = sw.plot_timeseries(recording, trange=[5, 8], color_groups=True)

##############################################################################
# **Note**: each function returns a widget object, which allows to access the figure and axis.

w_ts.figure.suptitle("Recording by group")
w_ts.ax.set_ylabel("Channel_ids")

##############################################################################
# plot_electrode_geometry()
# ~~~~~~~~~~~~~~~~~~~~~~~~~
w_el = sw.plot_electrode_geometry(recording)

##############################################################################
github SpikeInterface / spikeinterface / examples / modules / widgets / plot_1_rec_gallery.py View on Github external
Here is a gallery of all the available widgets using RecordingExtractor objects.
'''

import spikeinterface.extractors as se
import spikeinterface.widgets as sw

##############################################################################
# First, let's create a toy example with the `extractors` module:

recording, sorting = se.example_datasets.toy_example(duration=10, num_channels=4, seed=0)

##############################################################################
# plot_timeseries()
# ~~~~~~~~~~~~~~~~~

w_ts = sw.plot_timeseries(recording)

w_ts1 = sw.plot_timeseries(recording, trange=[5, 8])

recording.set_channel_groups(channel_ids=recording.get_channel_ids(), groups=[0, 0, 1, 1])
w_ts2 = sw.plot_timeseries(recording, trange=[5, 8], color_groups=True)

##############################################################################
# **Note**: each function returns a widget object, which allows to access the figure and axis.

w_ts.figure.suptitle("Recording by group")
w_ts.ax.set_ylabel("Channel_ids")

##############################################################################
# plot_electrode_geometry()
# ~~~~~~~~~~~~~~~~~~~~~~~~~
w_el = sw.plot_electrode_geometry(recording)
github SpikeInterface / spikeinterface / examples / getting_started / plot_getting_started.py View on Github external
##############################################################################
# First, let's create a toy example with the :code:`extractors` module:

recording, sorting_true = se.example_datasets.toy_example(duration=10, num_channels=4, seed=0)

##############################################################################
# :code:`recording` is a :code:`RecordingExtractor` object, which extracts information about channel ids, channel locations
# (if present), the sampling frequency of the recording, and the extracellular  traces. :code:`sorting_true` is a
# :code:`SortingExtractor` object, which contains information about spike-sorting related information,  including unit ids,
# spike trains, etc. Since the data are simulated, :code:`sorting_true` has ground-truth information of the spiking
# activity of each unit.
#
# Let's use the :code:`widgets` module to visualize the traces and the raster plots.

w_ts = sw.plot_timeseries(recording, trange=[0,5])
w_rs = sw.plot_rasters(sorting_true, trange=[0,5])

##############################################################################
# This is how you retrieve info from a :code:`RecordingExtractor`...

channel_ids = recording.get_channel_ids()
fs = recording.get_sampling_frequency()
num_chan = recording.get_num_channels()

print('Channel ids:', channel_ids)
print('Sampling frequency:', fs)
print('Number of channels:', num_chan)

##############################################################################
# ...and a :code:`SortingExtractor`
unit_ids = sorting_true.get_unit_ids()
github SpikeInterface / spikeinterface / examples / modules / widgets / plot_1_rec_gallery.py View on Github external
##############################################################################
# First, let's create a toy example with the `extractors` module:

recording, sorting = se.example_datasets.toy_example(duration=10, num_channels=4, seed=0)

##############################################################################
# plot_timeseries()
# ~~~~~~~~~~~~~~~~~

w_ts = sw.plot_timeseries(recording)

w_ts1 = sw.plot_timeseries(recording, trange=[5, 8])

recording.set_channel_groups(channel_ids=recording.get_channel_ids(), groups=[0, 0, 1, 1])
w_ts2 = sw.plot_timeseries(recording, trange=[5, 8], color_groups=True)

##############################################################################
# **Note**: each function returns a widget object, which allows to access the figure and axis.

w_ts.figure.suptitle("Recording by group")
w_ts.ax.set_ylabel("Channel_ids")

##############################################################################
# plot_electrode_geometry()
# ~~~~~~~~~~~~~~~~~~~~~~~~~
w_el = sw.plot_electrode_geometry(recording)

##############################################################################
# plot_spectrum()
# ~~~~~~~~~~~~~~~~
w_sp = sw.plot_spectrum(recording)