scipion-pyworkflow

v3.10.5

Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy. For more information about how to use this package see README

Latest version published 10 days ago

License: GPL-3.0

PyPI

GitHub

Package Health Score

69 / 100

security
Security review needed
popularity
Limited
maintenance
Healthy
community
Sustainable

Popularity

Limited

GitHub Stars: 6
Forks: 5
Contributors: 50

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package scipion-pyworkflow, we found that it has been starred 6 times.

Security

Security review needed

Security and license risk for latest version

Release Date: Nov 13, 2024
Direct Vulnerabilities: 0
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Indirect Vulnerabilities: 0
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License Risk: 2
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1
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All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

GPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

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Maintenance

Healthy

Commit Frequency

Open Issues: 37
Open PR: 1
Last Release: 10 days ago
Last Commit: 16 days ago

Further analysis of the maintenance status of scipion-pyworkflow based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Healthy.

We found that scipion-pyworkflow demonstrates a positive version release cadence with at least one new version released in the past 3 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Sustainable

Readme: Yes
Contributing.md: No
Code of Conduct: Yes
Contributors: 50
Funding: No

With more than 10 contributors for the scipion-pyworkflow repository, this is possibly a sign for a growing and inviting community.

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Package

Python Versions Compatibility: ==3.10.*, ==3.11.*, ==3.12.*, ==3.8.*, ==3.9.*

Age: 5 years
Latest Release: 10 days ago
Dependencies: 1 Direct / 9 Total
Versions: 63
Maintainers: 2
Wheels: OS Independent

Readme

pyworkflow

pyworkflow is a simple workflow platform used in scientific applications. It has been initially developed within the Scipion framework for image processing in Electron Microscopy.

pyworkflow allows you to define a working Domain by defining the following group of classes:

> - Objects: input/outputs that will be generated by different > programs > - Protocols: special type of Objects that have defined input > parameters and will produce some output > - Viewers: Entities that provide graphical analysis of results. > - Wizards: Small GUIs that can be develop to help users to select > given parameter values.

Development

To install pyworkflow for development purposes, one can do:

# Create a clean virtual environment
conda create -n scipion python=3.8
conda activate
git clone https://github.com/scipion-em/scipion-pyworkflow.git
cd scipion-pyworkflow
pip install -e .

Running tests

conda activate scipion
cd scipion-pyworkflow
export SCIPION_DOMAIN="pyworkflowtests/tests/mock_domain"
python -m unittest discover

# Simple project GUI can be shown after running tests:
python pyworkflow/apps/pw_project.py TestProtocolOutputs

All test projects are located in ~/ScipionUserData/Tests/

API documentation

scipion-pyworkflow dependencies

tkcolorpicker

FAQs

What is scipion-pyworkflow?

Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image pr... Visit Snyk Advisor to see a full health score report for scipion-pyworkflow, including popularity, security, maintenance & community analysis.

Is scipion-pyworkflow popular?

The python package scipion-pyworkflow receives a total of 665 weekly downloads. As such, scipion-pyworkflow popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is scipion-pyworkflow well maintained?

We found that scipion-pyworkflow demonstrated a healthy version release cadence and project activity. It has a community of 50 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is scipion-pyworkflow safe to use?

While scanning the latest version of scipion-pyworkflow, we found that a security review is needed. A total of 0 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 23 November-2024, at 00:46 (UTC).

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