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  4. sbol3.config.ConfigOptions
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How to use the sbol3.config.ConfigOptions function in sbol3

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github SynBioDex / pySBOL / sbol3 / config.py View on Github external
ConfigOptions.VALIDATOR_URL.value: 'http://www.async.ece.utah.edu/validate/',
    ConfigOptions.LANGUAGE.value: 'SBOL2',
    ConfigOptions.TEST_EQUALITY.value: False,
    ConfigOptions.CHECK_URI_COMPLIANCE.value: False,
    ConfigOptions.CHECK_COMPLETENESS.value: False,
    ConfigOptions.CHECK_BEST_PRACTICES.value: False,
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: False,
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: False,
    ConfigOptions.URI_PREFIX.value: '',
    ConfigOptions.SUBSET_URI.value: '',
    ConfigOptions.VERSION.value: '',
    ConfigOptions.INSERT_TYPE.value: False,
    ConfigOptions.MAIN_FILE_NAME.value: 'main file',
    ConfigOptions.DIFF_FILE_NAME.value: 'comparison file',
    ConfigOptions.RETURN_FILE.value: False,
    ConfigOptions.VERBOSE.value: False
}


valid_options = {
    ConfigOptions.SBOL_COMPLIANT_URIS.value: {True, False},
    ConfigOptions.SBOL_TYPED_URIS.value: {True, False},
    ConfigOptions.SERIALIZATION_FORMAT.value: {'sbol', 'rdfxml', 'json', 'ntriples'},
    ConfigOptions.VALIDATE.value: {True, False},
    ConfigOptions.LANGUAGE.value: {'SBOL2', 'FASTA', 'GenBank'},
    ConfigOptions.TEST_EQUALITY.value: {True, False},
    ConfigOptions.CHECK_URI_COMPLIANCE.value: {True, False},
    ConfigOptions.CHECK_COMPLETENESS.value: {True, False},
    ConfigOptions.CHECK_BEST_PRACTICES.value: {True, False},
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: {True, False},
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: {True, False},
    ConfigOptions.INSERT_TYPE.value: {True, False},
github SynBioDex / pySBOL / sbol3 / config.py View on Github external
ConfigOptions.DIFF_FILE_NAME.value: 'comparison file',
    ConfigOptions.RETURN_FILE.value: False,
    ConfigOptions.VERBOSE.value: False
}


valid_options = {
    ConfigOptions.SBOL_COMPLIANT_URIS.value: {True, False},
    ConfigOptions.SBOL_TYPED_URIS.value: {True, False},
    ConfigOptions.SERIALIZATION_FORMAT.value: {'sbol', 'rdfxml', 'json', 'ntriples'},
    ConfigOptions.VALIDATE.value: {True, False},
    ConfigOptions.LANGUAGE.value: {'SBOL2', 'FASTA', 'GenBank'},
    ConfigOptions.TEST_EQUALITY.value: {True, False},
    ConfigOptions.CHECK_URI_COMPLIANCE.value: {True, False},
    ConfigOptions.CHECK_COMPLETENESS.value: {True, False},
    ConfigOptions.CHECK_BEST_PRACTICES.value: {True, False},
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: {True, False},
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: {True, False},
    ConfigOptions.INSERT_TYPE.value: {True, False},
    ConfigOptions.RETURN_FILE.value: {True, False},
    ConfigOptions.VERBOSE.value: {True, False}
}


extension_namespaces = {}
# The authoritative namespace for the Document. Setting the home namespace is like signing a piece of paper.
home = None
# Flag indicating whether an object's type is included in SBOL-compliant URIs.
SBOLCompliantTypes = 1
catch_exceptions = 0
file_format = 'rdfxml'
github SynBioDex / pySBOL / sbol3 / config.py View on Github external
ConfigOptions.SUBSET_URI.value: '',
    ConfigOptions.VERSION.value: '',
    ConfigOptions.INSERT_TYPE.value: False,
    ConfigOptions.MAIN_FILE_NAME.value: 'main file',
    ConfigOptions.DIFF_FILE_NAME.value: 'comparison file',
    ConfigOptions.RETURN_FILE.value: False,
    ConfigOptions.VERBOSE.value: False
}


valid_options = {
    ConfigOptions.SBOL_COMPLIANT_URIS.value: {True, False},
    ConfigOptions.SBOL_TYPED_URIS.value: {True, False},
    ConfigOptions.SERIALIZATION_FORMAT.value: {'sbol', 'rdfxml', 'json', 'ntriples'},
    ConfigOptions.VALIDATE.value: {True, False},
    ConfigOptions.LANGUAGE.value: {'SBOL2', 'FASTA', 'GenBank'},
    ConfigOptions.TEST_EQUALITY.value: {True, False},
    ConfigOptions.CHECK_URI_COMPLIANCE.value: {True, False},
    ConfigOptions.CHECK_COMPLETENESS.value: {True, False},
    ConfigOptions.CHECK_BEST_PRACTICES.value: {True, False},
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: {True, False},
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: {True, False},
    ConfigOptions.INSERT_TYPE.value: {True, False},
    ConfigOptions.RETURN_FILE.value: {True, False},
    ConfigOptions.VERBOSE.value: {True, False}
}


extension_namespaces = {}
# The authoritative namespace for the Document. Setting the home namespace is like signing a piece of paper.
home = None
# Flag indicating whether an object's type is included in SBOL-compliant URIs.
github SynBioDex / pySBOL / sbol3 / config.py View on Github external
ConfigOptions.SBOL_TYPED_URIS.value: True,
    ConfigOptions.SERIALIZATION_FORMAT.value: 'sbol',
    ConfigOptions.VALIDATE.value: True,
    ConfigOptions.VALIDATOR_URL.value: 'http://www.async.ece.utah.edu/validate/',
    ConfigOptions.LANGUAGE.value: 'SBOL2',
    ConfigOptions.TEST_EQUALITY.value: False,
    ConfigOptions.CHECK_URI_COMPLIANCE.value: False,
    ConfigOptions.CHECK_COMPLETENESS.value: False,
    ConfigOptions.CHECK_BEST_PRACTICES.value: False,
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: False,
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: False,
    ConfigOptions.URI_PREFIX.value: '',
    ConfigOptions.SUBSET_URI.value: '',
    ConfigOptions.VERSION.value: '',
    ConfigOptions.INSERT_TYPE.value: False,
    ConfigOptions.MAIN_FILE_NAME.value: 'main file',
    ConfigOptions.DIFF_FILE_NAME.value: 'comparison file',
    ConfigOptions.RETURN_FILE.value: False,
    ConfigOptions.VERBOSE.value: False
}


valid_options = {
    ConfigOptions.SBOL_COMPLIANT_URIS.value: {True, False},
    ConfigOptions.SBOL_TYPED_URIS.value: {True, False},
    ConfigOptions.SERIALIZATION_FORMAT.value: {'sbol', 'rdfxml', 'json', 'ntriples'},
    ConfigOptions.VALIDATE.value: {True, False},
    ConfigOptions.LANGUAGE.value: {'SBOL2', 'FASTA', 'GenBank'},
    ConfigOptions.TEST_EQUALITY.value: {True, False},
    ConfigOptions.CHECK_URI_COMPLIANCE.value: {True, False},
    ConfigOptions.CHECK_COMPLETENESS.value: {True, False},
    ConfigOptions.CHECK_BEST_PRACTICES.value: {True, False},
github SynBioDex / pySBOL / sbol3 / config.py View on Github external
ConfigOptions.SBOL_COMPLIANT_URIS.value: True,
    ConfigOptions.SBOL_TYPED_URIS.value: True,
    ConfigOptions.SERIALIZATION_FORMAT.value: 'sbol',
    ConfigOptions.VALIDATE.value: True,
    ConfigOptions.VALIDATOR_URL.value: 'http://www.async.ece.utah.edu/validate/',
    ConfigOptions.LANGUAGE.value: 'SBOL2',
    ConfigOptions.TEST_EQUALITY.value: False,
    ConfigOptions.CHECK_URI_COMPLIANCE.value: False,
    ConfigOptions.CHECK_COMPLETENESS.value: False,
    ConfigOptions.CHECK_BEST_PRACTICES.value: False,
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: False,
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: False,
    ConfigOptions.URI_PREFIX.value: '',
    ConfigOptions.SUBSET_URI.value: '',
    ConfigOptions.VERSION.value: '',
    ConfigOptions.INSERT_TYPE.value: False,
    ConfigOptions.MAIN_FILE_NAME.value: 'main file',
    ConfigOptions.DIFF_FILE_NAME.value: 'comparison file',
    ConfigOptions.RETURN_FILE.value: False,
    ConfigOptions.VERBOSE.value: False
}


valid_options = {
    ConfigOptions.SBOL_COMPLIANT_URIS.value: {True, False},
    ConfigOptions.SBOL_TYPED_URIS.value: {True, False},
    ConfigOptions.SERIALIZATION_FORMAT.value: {'sbol', 'rdfxml', 'json', 'ntriples'},
    ConfigOptions.VALIDATE.value: {True, False},
    ConfigOptions.LANGUAGE.value: {'SBOL2', 'FASTA', 'GenBank'},
    ConfigOptions.TEST_EQUALITY.value: {True, False},
    ConfigOptions.CHECK_URI_COMPLIANCE.value: {True, False},
    ConfigOptions.CHECK_COMPLETENESS.value: {True, False},
github SynBioDex / pySBOL / sbol3 / config.py View on Github external
PROVIDE_DETAILED_STACK_TRACE = 'provide_detailed_stack_trace'
    URI_PREFIX = 'uri_prefix'
    SUBSET_URI = 'subset_uri'
    VERSION = 'version'
    INSERT_TYPE = 'insert_type'
    MAIN_FILE_NAME = 'main_file_name'
    DIFF_FILE_NAME = 'diff_file_name'
    RETURN_FILE = 'return_file'
    VERBOSE = 'verbose'


options = {
    ConfigOptions.HOMESPACE.value: 'http://examples.org',
    ConfigOptions.SBOL_COMPLIANT_URIS.value: True,
    ConfigOptions.SBOL_TYPED_URIS.value: True,
    ConfigOptions.SERIALIZATION_FORMAT.value: 'sbol',
    ConfigOptions.VALIDATE.value: True,
    ConfigOptions.VALIDATOR_URL.value: 'http://www.async.ece.utah.edu/validate/',
    ConfigOptions.LANGUAGE.value: 'SBOL2',
    ConfigOptions.TEST_EQUALITY.value: False,
    ConfigOptions.CHECK_URI_COMPLIANCE.value: False,
    ConfigOptions.CHECK_COMPLETENESS.value: False,
    ConfigOptions.CHECK_BEST_PRACTICES.value: False,
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: False,
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: False,
    ConfigOptions.URI_PREFIX.value: '',
    ConfigOptions.SUBSET_URI.value: '',
    ConfigOptions.VERSION.value: '',
    ConfigOptions.INSERT_TYPE.value: False,
    ConfigOptions.MAIN_FILE_NAME.value: 'main file',
    ConfigOptions.DIFF_FILE_NAME.value: 'comparison file',
    ConfigOptions.RETURN_FILE.value: False,
github SynBioDex / pySBOL / sbol3 / config.py View on Github external
ConfigOptions.VERSION.value: '',
    ConfigOptions.INSERT_TYPE.value: False,
    ConfigOptions.MAIN_FILE_NAME.value: 'main file',
    ConfigOptions.DIFF_FILE_NAME.value: 'comparison file',
    ConfigOptions.RETURN_FILE.value: False,
    ConfigOptions.VERBOSE.value: False
}


valid_options = {
    ConfigOptions.SBOL_COMPLIANT_URIS.value: {True, False},
    ConfigOptions.SBOL_TYPED_URIS.value: {True, False},
    ConfigOptions.SERIALIZATION_FORMAT.value: {'sbol', 'rdfxml', 'json', 'ntriples'},
    ConfigOptions.VALIDATE.value: {True, False},
    ConfigOptions.LANGUAGE.value: {'SBOL2', 'FASTA', 'GenBank'},
    ConfigOptions.TEST_EQUALITY.value: {True, False},
    ConfigOptions.CHECK_URI_COMPLIANCE.value: {True, False},
    ConfigOptions.CHECK_COMPLETENESS.value: {True, False},
    ConfigOptions.CHECK_BEST_PRACTICES.value: {True, False},
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: {True, False},
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: {True, False},
    ConfigOptions.INSERT_TYPE.value: {True, False},
    ConfigOptions.RETURN_FILE.value: {True, False},
    ConfigOptions.VERBOSE.value: {True, False}
}


extension_namespaces = {}
# The authoritative namespace for the Document. Setting the home namespace is like signing a piece of paper.
home = None
# Flag indicating whether an object's type is included in SBOL-compliant URIs.
SBOLCompliantTypes = 1
github SynBioDex / pySBOL / sbol3 / config.py View on Github external
ConfigOptions.VERBOSE.value: False
}


valid_options = {
    ConfigOptions.SBOL_COMPLIANT_URIS.value: {True, False},
    ConfigOptions.SBOL_TYPED_URIS.value: {True, False},
    ConfigOptions.SERIALIZATION_FORMAT.value: {'sbol', 'rdfxml', 'json', 'ntriples'},
    ConfigOptions.VALIDATE.value: {True, False},
    ConfigOptions.LANGUAGE.value: {'SBOL2', 'FASTA', 'GenBank'},
    ConfigOptions.TEST_EQUALITY.value: {True, False},
    ConfigOptions.CHECK_URI_COMPLIANCE.value: {True, False},
    ConfigOptions.CHECK_COMPLETENESS.value: {True, False},
    ConfigOptions.CHECK_BEST_PRACTICES.value: {True, False},
    ConfigOptions.FAIL_ON_FIRST_ERROR.value: {True, False},
    ConfigOptions.PROVIDE_DETAILED_STACK_TRACE.value: {True, False},
    ConfigOptions.INSERT_TYPE.value: {True, False},
    ConfigOptions.RETURN_FILE.value: {True, False},
    ConfigOptions.VERBOSE.value: {True, False}
}


extension_namespaces = {}
# The authoritative namespace for the Document. Setting the home namespace is like signing a piece of paper.
home = None
# Flag indicating whether an object's type is included in SBOL-compliant URIs.
SBOLCompliantTypes = 1
catch_exceptions = 0
file_format = 'rdfxml'


class Config:

sbol3

Python implementation of SBOL 3 standard

GitHub
MIT
Latest version published 1 year ago

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