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def roi1():
roi1_properties = {
'x': [1, 1, 3, 3],
'y': [1, 3, 3, 1]
}
fig = plt.figure()
roi1 = RoiPoly(color='r', fig=fig, show_fig=False)
roi1.x = roi1_properties['x']
roi1.y = roi1_properties['y']
return roi1
plt.title("left click: line segment right click or double click: close region")
plt.show(block=False)
# Let user draw first ROI
roi1 = RoiPoly(color='r', fig=fig)
# Show the image with the first ROI
fig = plt.figure()
plt.imshow(img, interpolation='nearest', cmap="Greys")
plt.colorbar()
roi1.display_roi()
plt.title('draw second ROI')
plt.show(block=False)
# Let user draw second ROI
roi2 = RoiPoly(color='b', fig=fig)
# Show the image with both ROIs and their mean values
plt.imshow(img, interpolation='nearest', cmap="Greys")
plt.colorbar()
for roi in [roi1, roi2]:
roi.display_roi()
roi.display_mean(img)
plt.title('The two ROIs')
plt.show()
# Show ROI masks
plt.imshow(roi1.get_mask(img) + roi2.get_mask(img),
interpolation='nearest', cmap="Greys")
plt.title('ROI masks of the two ROIs')
plt.show()
logging.basicConfig(format='%(levelname)s ''%(processName)-10s : %(asctime)s '
'%(module)s.%(funcName)s:%(lineno)s %(message)s',
level=logging.INFO)
# Create image
img = np.ones((100, 100)) * range(0, 100)
# Show the image
fig = plt.figure()
plt.imshow(img, interpolation='nearest', cmap="Greys")
plt.colorbar()
plt.title("left click: line segment right click or double click: close region")
plt.show(block=False)
# Let user draw first ROI
roi1 = RoiPoly(color='r', fig=fig)
# Show the image with the first ROI
fig = plt.figure()
plt.imshow(img, interpolation='nearest', cmap="Greys")
plt.colorbar()
roi1.display_roi()
plt.title('draw second ROI')
plt.show(block=False)
# Let user draw second ROI
roi2 = RoiPoly(color='b', fig=fig)
# Show the image with both ROIs and their mean values
plt.imshow(img, interpolation='nearest', cmap="Greys")
plt.colorbar()
for roi in [roi1, roi2]:
"""Test if the old example still works
(commit 80737fa9d66d839e52b40d7cadcf02e143a86b4a)"""
import pylab as pl
from roipoly import roipoly
# create image
img = pl.ones((100, 100)) * range(0, 100)
# show the image
pl.imshow(img, interpolation='nearest', cmap="Greys")
pl.colorbar()
pl.title("left click: line segment right click: close region")
# let user draw first ROI
ROI1 = roipoly(roicolor='r') # let user draw first ROI
# show the image with the first ROI
pl.imshow(img, interpolation='nearest', cmap="Greys")
pl.colorbar()
ROI1.displayROI()
pl.title('draw second ROI')
# let user draw second ROI
ROI2 = roipoly(roicolor='b') # let user draw ROI
# show the image with both ROIs and their mean values
pl.imshow(img, interpolation='nearest', cmap="Greys")
pl.colorbar()
[x.displayROI() for x in [ROI1, ROI2]]
[x.displayMean(img) for x in [ROI1, ROI2]]
pl.title('The two ROIs')
# show the image
pl.imshow(img, interpolation='nearest', cmap="Greys")
pl.colorbar()
pl.title("left click: line segment right click: close region")
# let user draw first ROI
ROI1 = roipoly(roicolor='r') # let user draw first ROI
# show the image with the first ROI
pl.imshow(img, interpolation='nearest', cmap="Greys")
pl.colorbar()
ROI1.displayROI()
pl.title('draw second ROI')
# let user draw second ROI
ROI2 = roipoly(roicolor='b') # let user draw ROI
# show the image with both ROIs and their mean values
pl.imshow(img, interpolation='nearest', cmap="Greys")
pl.colorbar()
[x.displayROI() for x in [ROI1, ROI2]]
[x.displayMean(img) for x in [ROI1, ROI2]]
pl.title('The two ROIs')
pl.show()
# show ROI masks
pl.imshow(ROI1.getMask(img) + ROI2.getMask(img),
interpolation='nearest', cmap="Greys")
pl.title('ROI masks of the two ROIs')
pl.show()
# Only draw a new ROI if the previous one is completed
if self.rois:
if not all(r.completed for r in self.rois.values()):
return
count = len(self.rois)
idx = count % len(self.color_cycle)
logger.debug("Creating new ROI {}".format(count))
if self.roi_names is not None and idx < len(self.roi_names):
roi_name = self.roi_names[idx]
else:
roi_name = str(count + 1)
self.ax.set_title("Draw ROI '{}'".format(roi_name))
plt.draw()
roi = RoiPoly(color=self.color_cycle[idx],
fig=self.fig,
ax=self.ax,
close_fig=False,
show_fig=False)
self.rois[roi_name] = roi
def roipoly(*args, **kwargs):
deprecation("Import 'RoiPoly' instead of 'roipoly'!")
return RoiPoly(*args, **kwargs)