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Not sure how to use pyod?

To help you get started, we've collected the most common ways that pyod is being used within popular public projects.

yzhao062 / SUOD / examples / demo_base.py View on Github

model.fit(X_train)  # fit all models with X
    model.approximate(X_train)  # conduct model approximation if it is enabled
    predicted_labels = model.predict(X_test)  # predict labels
    predicted_scores = model.decision_function(X_test)  # predict scores
    predicted_probs = model.predict_proba(X_test)  # predict scores

    ###########################################################################
    # compared with other approaches
    evaluate_print('majority vote', y_test, majority_vote(predicted_labels))
    evaluate_print('average', y_test, average(predicted_scores))
    evaluate_print('maximization', y_test, maximization(predicted_scores))

    clf = LOF()
    clf.fit(X_train)
    evaluate_print('LOF', y_test, clf.decision_function(X_test))

    clf = IForest()
    clf.fit(X_train)
    evaluate_print('IForest', y_test, clf.decision_function(X_test))

View more ways to use pyod

Python Outlier Detection (PyOD)

Deployment & Documentation & Stats & License

Read Me First

Welcome to PyOD, a comprehensive but easy-to-use Python library for detecting anomalies in multivariate data. Whether you're tackling a small-scale project or large datasets, PyOD offers a range of algorithms to suit your needs.

For time-series outlier detection, please use TODS.
For graph outlier detection, please use PyGOD.
Performance Comparison & Datasets: We have a 45-page, comprehensive anomaly detection benchmark paper. The fully open-sourced ADBench compares 30 anomaly detection algorithms on 57 benchmark datasets.
Learn more about anomaly detection at Anomaly Detection Resources
PyOD on Distributed Systems: you can also run PyOD on databricks.

About PyOD

PyOD, established in 2017, has become a go-to Python library for detecting anomalous/outlying objects in multivariate data. This exciting yet challenging field is commonly referred to as Outlier Detection or Anomaly Detection.

PyOD includes more than 50 detection algorithms, from classical LOF (SIGMOD 2000) to the cutting-edge ECOD and DIF (TKDE 2022 and 2023). Since 2017, PyOD has been successfully used in numerous academic research projects and commercial products with more than 22 million downloads. It is also well acknowledged by the machine learning community with various dedicated posts/tutorials, including Analytics Vidhya, KDnuggets, and Towards Data Science.

PyOD is featured for:

Unified, User-Friendly Interface across various algorithms.
Wide Range of Models, from classic techniques to the latest deep learning methods in PyTorch.
High Performance & Efficiency, leveraging numba and joblib for JIT compilation and parallel processing.
Fast Training & Prediction, achieved through the SUOD framework[1].

Outlier Detection with 5 Lines of Code:

# Example: Training an ECOD detector
from pyod.models.ecod import ECOD
clf = ECOD()
clf.fit(X_train)
y_train_scores = clf.decision_scores_  # Outlier scores for training data
y_test_scores = clf.decision_function(X_test)  # Outlier scores for test data

Selecting the Right Algorithm: Unsure where to start? Consider these robust and interpretable options:

ECOD: Example of using ECOD for outlier detection
Isolation Forest: Example of using Isolation Forest for outlier detection

Alternatively, explore MetaOD for a data-driven approach.

Citing PyOD:

PyOD paper is published in Journal of Machine Learning Research (JMLR) (MLOSS track). If you use PyOD in a scientific publication, we would appreciate citations to the following paper:

@article{zhao2019pyod,
    author  = {Zhao, Yue and Nasrullah, Zain and Li, Zheng},
    title   = {PyOD: A Python Toolbox for Scalable Outlier Detection},
    journal = {Journal of Machine Learning Research},
    year    = {2019},
    volume  = {20},
    number  = {96},
    pages   = {1-7},
    url     = {http://jmlr.org/papers/v20/19-011.html}
}

or:

Zhao, Y., Nasrullah, Z. and Li, Z., 2019. PyOD: A Python Toolbox for Scalable Outlier Detection. Journal of machine learning research (JMLR), 20(96), pp.1-7.

For a broader perspective on anomaly detection, see our NeurIPS papers ADBench: Anomaly Detection Benchmark Paper and ADGym: Design Choices for Deep Anomaly Detection:

@article{han2022adbench,
    title={Adbench: Anomaly detection benchmark},
    author={Han, Songqiao and Hu, Xiyang and Huang, Hailiang and Jiang, Minqi and Zhao, Yue},
    journal={Advances in Neural Information Processing Systems},
    volume={35},
    pages={32142--32159},
    year={2022}
}

@article{jiang2023adgym,
    title={ADGym: Design Choices for Deep Anomaly Detection},
    author={Jiang, Minqi and Hou, Chaochuan and Zheng, Ao and Han, Songqiao and Huang, Hailiang and Wen, Qingsong and Hu, Xiyang and Zhao, Yue},
    journal={Advances in Neural Information Processing Systems},
    volume={36},
    year={2023}
}

Table of Contents:

Installation

PyOD is designed for easy installation using either pip or conda. We recommend using the latest version of PyOD due to frequent updates and enhancements:

pip install pyod            # normal install
pip install --upgrade pyod  # or update if needed

conda install -c conda-forge pyod

Alternatively, you can clone and run the setup.py file:

git clone https://github.com/yzhao062/pyod.git
cd pyod
pip install .

Required Dependencies:

Python 3.8 or higher
joblib
matplotlib
numpy>=1.19
numba>=0.51
scipy>=1.5.1
scikit_learn>=0.22.0

Optional Dependencies (see details below):

combo (optional, required for models/combination.py and FeatureBagging)
pytorch (optional, required for AutoEncoder, and other deep learning models)
suod (optional, required for running SUOD model)
xgboost (optional, required for XGBOD)
pythresh (optional, required for thresholding)

API Cheatsheet & Reference

The full API Reference is available at PyOD Documentation. Below is a quick cheatsheet for all detectors:

fit(X): Fit the detector. The parameter y is ignored in unsupervised methods.
decision_function(X): Predict raw anomaly scores for X using the fitted detector.
predict(X): Determine whether a sample is an outlier or not as binary labels using the fitted detector.
predict_proba(X): Estimate the probability of a sample being an outlier using the fitted detector.
predict_confidence(X): Assess the model's confidence on a per-sample basis (applicable in predict and predict_proba)[2].

Key Attributes of a fitted model:

decision_scores_: Outlier scores of the training data. Higher scores typically indicate more abnormal behavior. Outliers usually have higher scores.
labels_: Binary labels of the training data, where 0 indicates inliers and 1 indicates outliers/anomalies.

ADBench Benchmark and Datasets

We just released a 45-page, the most comprehensive ADBench: Anomaly Detection Benchmark[3]. The fully open-sourced ADBench compares 30 anomaly detection algorithms on 57 benchmark datasets.

The organization of ADBench is provided below:

For a simpler visualization, we make the comparison of selected models via compare_all_models.py.

Model Save & Load

PyOD takes a similar approach of sklearn regarding model persistence. See model persistence for clarification.

In short, we recommend to use joblib or pickle for saving and loading PyOD models. See "examples/save_load_model_example.py" for an example. In short, it is simple as below:

from joblib import dump, load

# save the model
dump(clf, 'clf.joblib')
# load the model
clf = load('clf.joblib')

It is known that there are challenges in saving neural network models. Check #328 and #88 for temporary workaround.

Fast Train with SUOD

Fast training and prediction: it is possible to train and predict with a large number of detection models in PyOD by leveraging SUOD framework[4]. See SUOD Paper and SUOD example.

from pyod.models.suod import SUOD

# initialized a group of outlier detectors for acceleration
detector_list = [LOF(n_neighbors=15), LOF(n_neighbors=20),
                 LOF(n_neighbors=25), LOF(n_neighbors=35),
                 COPOD(), IForest(n_estimators=100),
                 IForest(n_estimators=200)]

# decide the number of parallel process, and the combination method
# then clf can be used as any outlier detection model
clf = SUOD(base_estimators=detector_list, n_jobs=2, combination='average',
           verbose=False)

Thresholding Outlier Scores

A more data-based approach can be taken when setting the contamination level. By using a thresholding method, guessing an arbitrary value can be replaced with tested techniques for separating inliers and outliers. Refer to PyThresh for a more in-depth look at thresholding.

from pyod.models.knn import KNN
from pyod.models.thresholds import FILTER

# Set the outlier detection and thresholding methods
clf = KNN(contamination=FILTER())

See supported thresholding methods in thresholding.

Implemented Algorithms

PyOD toolkit consists of four major functional groups:

(i) Individual Detection Algorithms :

Type	Abbr	Algorithm	Year	Ref
Probabilistic	ECOD	Unsupervised Outlier Detection Using Empirical Cumulative Distribution Functions	2022	¹
Probabilistic	ABOD	Angle-Based Outlier Detection	2008	²
Probabilistic	FastABOD	Fast Angle-Based Outlier Detection using approximation	2008	³
Probabilistic	COPOD	COPOD: Copula-Based Outlier Detection	2020	⁴
Probabilistic	MAD	Median Absolute Deviation (MAD)	1993	⁵
Probabilistic	SOS	Stochastic Outlier Selection	2012	⁶
Probabilistic	QMCD	Quasi-Monte Carlo Discrepancy outlier detection	2001	⁷
Probabilistic	KDE	Outlier Detection with Kernel Density Functions	2007	⁸
Probabilistic Probabilistic	Sampling GMM	Rapid distance-based outlier detection via sampling Probabilistic Mixture Modeling for Outlier Analysis	2013	⁹ ¹⁰ [Ch.2]
Linear Model	PCA	Principal Component Analysis (the sum of weighted projected distances to the eigenvector hyperplanes)	2003	¹¹
Linear Model	KPCA	Kernel Principal Component Analysis	2007	¹²
Linear Model	MCD	Minimum Covariance Determinant (use the mahalanobis distances as the outlier scores)	1999	¹³ ¹⁴
Linear Model	CD	Use Cook's distance for outlier detection	1977	¹⁵
Linear Model	OCSVM	One-Class Support Vector Machines	2001	¹⁶
Linear Model	LMDD	Deviation-based Outlier Detection (LMDD)	1996	¹⁷
Proximity-Based	LOF	Local Outlier Factor	2000	¹⁸
Proximity-Based	COF	Connectivity-Based Outlier Factor	2002	¹⁹
Proximity-Based	(Incremental) COF	Memory Efficient Connectivity-Based Outlier Factor (slower but reduce storage complexity)	2002	²⁰
Proximity-Based	CBLOF	Clustering-Based Local Outlier Factor	2003	²¹
Proximity-Based	LOCI	LOCI: Fast outlier detection using the local correlation integral	2003	²²
Proximity-Based	HBOS	Histogram-based Outlier Score	2012	²³
Proximity-Based	kNN	k Nearest Neighbors (use the distance to the kth nearest neighbor as the outlier score)	2000	²⁴
Proximity-Based	AvgKNN	Average kNN (use the average distance to k nearest neighbors as the outlier score)	2002	²⁵
Proximity-Based	MedKNN	Median kNN (use the median distance to k nearest neighbors as the outlier score)	2002	²⁶
Proximity-Based	SOD	Subspace Outlier Detection	2009	²⁷
Proximity-Based	ROD	Rotation-based Outlier Detection	2020	²⁸
Outlier Ensembles	IForest	Isolation Forest	2008	²⁹
Outlier Ensembles	INNE	Isolation-based Anomaly Detection Using Nearest-Neighbor Ensembles	2018	³⁰
Outlier Ensembles	DIF	Deep Isolation Forest for Anomaly Detection	2023	³¹
Outlier Ensembles	FB	Feature Bagging	2005	³²
Outlier Ensembles	LSCP	LSCP: Locally Selective Combination of Parallel Outlier Ensembles	2019	³³
Outlier Ensembles	XGBOD	Extreme Boosting Based Outlier Detection (Supervised)	2018	³⁴
Outlier Ensembles	LODA	Lightweight On-line Detector of Anomalies	2016	³⁵
Outlier Ensembles Neural Networks	SUOD AutoEncoder	SUOD: Accelerating Large-scale Unsupervised Heterogeneous Outlier Detection (Acceleration) Fully connected AutoEncoder (use reconstruction error as the outlier score)	2021	³⁶ ³⁷ [Ch.3]
Neural Networks	VAE	Variational AutoEncoder (use reconstruction error as the outlier score)	2013	³⁸
Neural Networks	Beta-VAE	Variational AutoEncoder (all customized loss term by varying gamma and capacity)	2018	³⁹
Neural Networks	SO_GAAL	Single-Objective Generative Adversarial Active Learning	2019	⁴⁰
Neural Networks	MO_GAAL	Multiple-Objective Generative Adversarial Active Learning	2019	⁴¹
Neural Networks	DeepSVDD	Deep One-Class Classification	2018	⁴²
Neural Networks	AnoGAN	Anomaly Detection with Generative Adversarial Networks	2017	⁴³
Neural Networks	ALAD	Adversarially learned anomaly detection	2018	⁴⁴
Neural Networks	AE1SVM	Autoencoder-based One-class Support Vector Machine	2019	⁴⁵
Neural Networks	DevNet	Deep Anomaly Detection with Deviation Networks	2019	⁴⁶
Graph-based	R-Graph	Outlier detection by R-graph	2017	⁴⁷
Graph-based	LUNAR	LUNAR: Unifying Local Outlier Detection Methods via Graph Neural Networks	2022	⁴⁸

Li, Z., Zhao, Y., Hu, X., Botta, N., Ionescu, C. and Chen, H. G. ECOD: Unsupervised Outlier Detection Using Empirical Cumulative Distribution Functions. IEEE Transactions on Knowledge and Data Engineering (TKDE), 2022.↩︎
Kriegel, H.P. and Zimek, A., 2008, August. Angle-based outlier detection in high-dimensional data. In KDD '08, pp. 444-452. ACM.↩︎
Kriegel, H.P. and Zimek, A., 2008, August. Angle-based outlier detection in high-dimensional data. In KDD '08, pp. 444-452. ACM.↩︎
Li, Z., Zhao, Y., Botta, N., Ionescu, C. and Hu, X. COPOD: Copula-Based Outlier Detection. IEEE International Conference on Data Mining (ICDM), 2020.↩︎
Iglewicz, B. and Hoaglin, D.C., 1993. How to detect and handle outliers (Vol. 16). Asq Press.↩︎
Janssens, J.H.M., Huszár, F., Postma, E.O. and van den Herik, H.J., 2012. Stochastic outlier selection. Technical report TiCC TR 2012-001, Tilburg University, Tilburg Center for Cognition and Communication, Tilburg, The Netherlands.↩︎
Fang, K.T. and Ma, C.X., 2001. Wrap-around L2-discrepancy of random sampling, Latin hypercube and uniform designs. Journal of complexity, 17(4), pp.608-624.↩︎
Latecki, L.J., Lazarevic, A. and Pokrajac, D., 2007, July. Outlier detection with kernel density functions. In International Workshop on Machine Learning and Data Mining in Pattern Recognition (pp. 61-75). Springer, Berlin, Heidelberg.↩︎
Sugiyama, M. and Borgwardt, K., 2013. Rapid distance-based outlier detection via sampling. Advances in neural information processing systems, 26.↩︎
Aggarwal, C.C., 2015. Outlier analysis. In Data mining (pp. 237-263). Springer, Cham.↩︎
Shyu, M.L., Chen, S.C., Sarinnapakorn, K. and Chang, L., 2003. A novel anomaly detection scheme based on principal component classifier. MIAMI UNIV CORAL GABLES FL DEPT OF ELECTRICAL AND COMPUTER ENGINEERING.↩︎
Hoffmann, H., 2007. Kernel PCA for novelty detection. Pattern recognition, 40(3), pp.863-874.↩︎
Hardin, J. and Rocke, D.M., 2004. Outlier detection in the multiple cluster setting using the minimum covariance determinant estimator. Computational Statistics & Data Analysis, 44(4), pp.625-638.↩︎
Rousseeuw, P.J. and Driessen, K.V., 1999. A fast algorithm for the minimum covariance determinant estimator. Technometrics, 41(3), pp.212-223.↩︎
Cook, R.D., 1977. Detection of influential observation in linear regression. Technometrics, 19(1), pp.15-18.↩︎
Scholkopf, B., Platt, J.C., Shawe-Taylor, J., Smola, A.J. and Williamson, R.C., 2001. Estimating the support of a high-dimensional distribution. Neural Computation, 13(7), pp.1443-1471.↩︎
Arning, A., Agrawal, R. and Raghavan, P., 1996, August. A Linear Method for Deviation Detection in Large Databases. In KDD (Vol. 1141, No. 50, pp. 972-981).↩︎
Breunig, M.M., Kriegel, H.P., Ng, R.T. and Sander, J., 2000, May. LOF: identifying density-based local outliers. ACM Sigmod Record, 29(2), pp. 93-104.↩︎
Tang, J., Chen, Z., Fu, A.W.C. and Cheung, D.W., 2002, May. Enhancing effectiveness of outlier detections for low density patterns. In Pacific-Asia Conference on Knowledge Discovery and Data Mining, pp. 535-548. Springer, Berlin, Heidelberg.↩︎
Tang, J., Chen, Z., Fu, A.W.C. and Cheung, D.W., 2002, May. Enhancing effectiveness of outlier detections for low density patterns. In Pacific-Asia Conference on Knowledge Discovery and Data Mining, pp. 535-548. Springer, Berlin, Heidelberg.↩︎
He, Z., Xu, X. and Deng, S., 2003. Discovering cluster-based local outliers. Pattern Recognition Letters, 24(9-10), pp.1641-1650.↩︎
Papadimitriou, S., Kitagawa, H., Gibbons, P.B. and Faloutsos, C., 2003, March. LOCI: Fast outlier detection using the local correlation integral. In ICDE '03, pp. 315-326. IEEE.↩︎
Goldstein, M. and Dengel, A., 2012. Histogram-based outlier score (hbos): A fast unsupervised anomaly detection algorithm. In KI-2012: Poster and Demo Track, pp.59-63.↩︎
Ramaswamy, S., Rastogi, R. and Shim, K., 2000, May. Efficient algorithms for mining outliers from large data sets. ACM Sigmod Record, 29(2), pp. 427-438.↩︎
Angiulli, F. and Pizzuti, C., 2002, August. Fast outlier detection in high dimensional spaces. In European Conference on Principles of Data Mining and Knowledge Discovery pp. 15-27.↩︎
Angiulli, F. and Pizzuti, C., 2002, August. Fast outlier detection in high dimensional spaces. In European Conference on Principles of Data Mining and Knowledge Discovery pp. 15-27.↩︎
Kriegel, H.P., Kröger, P., Schubert, E. and Zimek, A., 2009, April. Outlier detection in axis-parallel subspaces of high dimensional data. In Pacific-Asia Conference on Knowledge Discovery and Data Mining, pp. 831-838. Springer, Berlin, Heidelberg.↩︎
Almardeny, Y., Boujnah, N. and Cleary, F., 2020. A Novel Outlier Detection Method for Multivariate Data. IEEE Transactions on Knowledge and Data Engineering.↩︎
Liu, F.T., Ting, K.M. and Zhou, Z.H., 2008, December. Isolation forest. In International Conference on Data Mining, pp. 413-422. IEEE.↩︎
Bandaragoda, T. R., Ting, K. M., Albrecht, D., Liu, F. T., Zhu, Y., and Wells, J. R., 2018, Isolation-based anomaly detection using nearest-neighbor ensembles. Computational Intelligence, 34(4), pp. 968-998.↩︎
Xu, H., Pang, G., Wang, Y., Wang, Y., 2023. Deep isolation forest for anomaly detection. IEEE Transactions on Knowledge and Data Engineering.↩︎
Lazarevic, A. and Kumar, V., 2005, August. Feature bagging for outlier detection. In KDD '05. 2005.↩︎
Zhao, Y., Nasrullah, Z., Hryniewicki, M.K. and Li, Z., 2019, May. LSCP: Locally selective combination in parallel outlier ensembles. In Proceedings of the 2019 SIAM International Conference on Data Mining (SDM), pp. 585-593. Society for Industrial and Applied Mathematics.↩︎
Zhao, Y. and Hryniewicki, M.K. XGBOD: Improving Supervised Outlier Detection with Unsupervised Representation Learning. IEEE International Joint Conference on Neural Networks, 2018.↩︎
Pevný, T., 2016. Loda: Lightweight on-line detector of anomalies. Machine Learning, 102(2), pp.275-304.↩︎
Zhao, Y., Hu, X., Cheng, C., Wang, C., Wan, C., Wang, W., Yang, J., Bai, H., Li, Z., Xiao, C., Wang, Y., Qiao, Z., Sun, J. and Akoglu, L. (2021). SUOD: Accelerating Large-scale Unsupervised Heterogeneous Outlier Detection. Conference on Machine Learning and Systems (MLSys).↩︎
Aggarwal, C.C., 2015. Outlier analysis. In Data mining (pp. 237-263). Springer, Cham.↩︎
Kingma, D.P. and Welling, M., 2013. Auto-encoding variational bayes. arXiv preprint arXiv:1312.6114.↩︎
Burgess, Christopher P., et al. "Understanding disentangling in beta-VAE." arXiv preprint arXiv:1804.03599 (2018).↩︎
Liu, Y., Li, Z., Zhou, C., Jiang, Y., Sun, J., Wang, M. and He, X., 2019. Generative adversarial active learning for unsupervised outlier detection. IEEE Transactions on Knowledge and Data Engineering.↩︎
Liu, Y., Li, Z., Zhou, C., Jiang, Y., Sun, J., Wang, M. and He, X., 2019. Generative adversarial active learning for unsupervised outlier detection. IEEE Transactions on Knowledge and Data Engineering.↩︎
Ruff, L., Vandermeulen, R., Goernitz, N., Deecke, L., Siddiqui, S.A., Binder, A., Müller, E. and Kloft, M., 2018, July. Deep one-class classification. In International conference on machine learning (pp. 4393-4402). PMLR.↩︎
Schlegl, T., Seeböck, P., Waldstein, S.M., Schmidt-Erfurth, U. and Langs, G., 2017, June. Unsupervised anomaly detection with generative adversarial networks to guide marker discovery. In International conference on information processing in medical imaging (pp. 146-157). Springer, Cham.↩︎
Zenati, H., Romain, M., Foo, C.S., Lecouat, B. and Chandrasekhar, V., 2018, November. Adversarially learned anomaly detection. In 2018 IEEE International conference on data mining (ICDM) (pp. 727-736). IEEE.↩︎
Nguyen, M.N. and Vien, N.A., 2019. Scalable and interpretable one-class svms with deep learning and random fourier features. In Machine Learning and Knowledge Discovery in Databases: European Conference, ECML PKDD, 2018.↩︎
Pang, Guansong, Chunhua Shen, and Anton Van Den Hengel. "Deep anomaly detection with deviation networks." In KDD, pp. 353-362. 2019.↩︎
You, C., Robinson, D.P. and Vidal, R., 2017. Provable self-representation based outlier detection in a union of subspaces. In Proceedings of the IEEE conference on computer vision and pattern recognition.↩︎
Goodge, A., Hooi, B., Ng, S.K. and Ng, W.S., 2022, June. Lunar: Unifying local outlier detection methods via graph neural networks. In Proceedings of the AAAI Conference on Artificial Intelligence.↩︎

(ii) Outlier Ensembles & Outlier Detector Combination Frameworks:

Type	Abbr	Algorithm	Year	Ref
Outlier Ensembles	FB	Feature Bagging	2005	¹
Outlier Ensembles	LSCP	LSCP: Locally Selective Combination of Parallel Outlier Ensembles	2019	²
Outlier Ensembles	XGBOD	Extreme Boosting Based Outlier Detection (Supervised)	2018	³
Outlier Ensembles	LODA	Lightweight On-line Detector of Anomalies	2016	⁴
Outlier Ensembles	SUOD	SUOD: Accelerating Large-scale Unsupervised Heterogeneous Outlier Detection (Acceleration)	2021	⁵
Outlier Ensembles	INNE	Isolation-based Anomaly Detection Using Nearest-Neighbor Ensembles	2018	⁶
Combination	Average	Simple combination by averaging the scores	2015	⁷
Combination	Weighted Average	Simple combination by averaging the scores with detector weights	2015	⁸
Combination	Maximization	Simple combination by taking the maximum scores	2015	⁹
Combination	AOM	Average of Maximum	2015	¹⁰
Combination	MOA	Maximization of Average	2015	¹¹
Combination	Median	Simple combination by taking the median of the scores	2015	¹²
Combination	majority Vote	Simple combination by taking the majority vote of the labels (weights can be used)	2015	¹³

Lazarevic, A. and Kumar, V., 2005, August. Feature bagging for outlier detection. In KDD '05. 2005.↩︎
Zhao, Y., Nasrullah, Z., Hryniewicki, M.K. and Li, Z., 2019, May. LSCP: Locally selective combination in parallel outlier ensembles. In Proceedings of the 2019 SIAM International Conference on Data Mining (SDM), pp. 585-593. Society for Industrial and Applied Mathematics.↩︎
Zhao, Y. and Hryniewicki, M.K. XGBOD: Improving Supervised Outlier Detection with Unsupervised Representation Learning. IEEE International Joint Conference on Neural Networks, 2018.↩︎
Pevný, T., 2016. Loda: Lightweight on-line detector of anomalies. Machine Learning, 102(2), pp.275-304.↩︎
Zhao, Y., Hu, X., Cheng, C., Wang, C., Wan, C., Wang, W., Yang, J., Bai, H., Li, Z., Xiao, C., Wang, Y., Qiao, Z., Sun, J. and Akoglu, L. (2021). SUOD: Accelerating Large-scale Unsupervised Heterogeneous Outlier Detection. Conference on Machine Learning and Systems (MLSys).↩︎
Bandaragoda, T. R., Ting, K. M., Albrecht, D., Liu, F. T., Zhu, Y., and Wells, J. R., 2018, Isolation-based anomaly detection using nearest-neighbor ensembles. Computational Intelligence, 34(4), pp. 968-998.↩︎
Aggarwal, C.C. and Sathe, S., 2015. Theoretical foundations and algorithms for outlier ensembles.ACM SIGKDD Explorations Newsletter, 17(1), pp.24-47.↩︎
Aggarwal, C.C. and Sathe, S., 2015. Theoretical foundations and algorithms for outlier ensembles.ACM SIGKDD Explorations Newsletter, 17(1), pp.24-47.↩︎
Aggarwal, C.C. and Sathe, S., 2015. Theoretical foundations and algorithms for outlier ensembles.ACM SIGKDD Explorations Newsletter, 17(1), pp.24-47.↩︎
Aggarwal, C.C. and Sathe, S., 2015. Theoretical foundations and algorithms for outlier ensembles.ACM SIGKDD Explorations Newsletter, 17(1), pp.24-47.↩︎
Aggarwal, C.C. and Sathe, S., 2015. Theoretical foundations and algorithms for outlier ensembles.ACM SIGKDD Explorations Newsletter, 17(1), pp.24-47.↩︎
Aggarwal, C.C. and Sathe, S., 2015. Theoretical foundations and algorithms for outlier ensembles.ACM SIGKDD Explorations Newsletter, 17(1), pp.24-47.↩︎
Aggarwal, C.C. and Sathe, S., 2015. Theoretical foundations and algorithms for outlier ensembles.ACM SIGKDD Explorations Newsletter, 17(1), pp.24-47.↩︎

(iii) Utility Functions:

Type	Name	Function	Documentation
Data	generate_data	Synthesized data generation; normal data is generated by a multivariate Gaussian and outliers are generated by a uniform distribution	generate_data
Data	generate_data_clusters	Synthesized data generation in clusters; more complex data patterns can be created with multiple clusters	generate_data_clusters
Stat	wpearsonr	Calculate the weighted Pearson correlation of two samples	wpearsonr
Utility	get_label_n	Turn raw outlier scores into binary labels by assign 1 to top n outlier scores	get_label_n
Utility	precision_n_scores	calculate precision @ rank n	precision_n_scores

Quick Start for Outlier Detection

PyOD has been well acknowledged by the machine learning community with a few featured posts and tutorials.

Analytics Vidhya: An Awesome Tutorial to Learn Outlier Detection in Python using PyOD Library

KDnuggets: Intuitive Visualization of Outlier Detection Methods, An Overview of Outlier Detection Methods from PyOD

Towards Data Science: Anomaly Detection for Dummies

"examples/knn_example.py" demonstrates the basic API of using kNN detector. It is noted that the API across all other algorithms are consistent/similar.

More detailed instructions for running examples can be found in examples directory.

Initialize a kNN detector, fit the model, and make the prediction.

from pyod.models.knn import KNN   # kNN detector

# train kNN detector
clf_name = 'KNN'
clf = KNN()
clf.fit(X_train)

# get the prediction label and outlier scores of the training data
y_train_pred = clf.labels_  # binary labels (0: inliers, 1: outliers)
y_train_scores = clf.decision_scores_  # raw outlier scores

# get the prediction on the test data
y_test_pred = clf.predict(X_test)  # outlier labels (0 or 1)
y_test_scores = clf.decision_function(X_test)  # outlier scores

# it is possible to get the prediction confidence as well
y_test_pred, y_test_pred_confidence = clf.predict(X_test, return_confidence=True)  # outlier labels (0 or 1) and confidence in the range of [0,1]

Evaluate the prediction by ROC and Precision @ Rank n ().

from pyod.utils.data import evaluate_print

# evaluate and print the results
print("\nOn Training Data:")
evaluate_print(clf_name, y_train, y_train_scores)
print("\nOn Test Data:")
evaluate_print(clf_name, y_test, y_test_scores)

See a sample output & visualization.

On Training Data:
KNN ROC:1.0, precision @ rank n:1.0

On Test Data:
KNN ROC:0.9989, precision @ rank n:0.9

visualize(clf_name, X_train, y_train, X_test, y_test, y_train_pred,
    y_test_pred, show_figure=True, save_figure=False)

Visualization (knn_figure):

Reference

[1] Zhao, Y., Hu, X., Cheng, C., Wang, C., Wan, C., Wang, W., Yang, J., Bai, H., Li, Z., Xiao, C., Wang, Y., Qiao, Z., Sun, J. and Akoglu, L. (2021). SUOD: Accelerating Large-scale Unsupervised Heterogeneous Outlier Detection. Conference on Machine Learning and Systems (MLSys).

[2] Perini, L., Vercruyssen, V., Davis, J. Quantifying the confidence of anomaly detectors in their example-wise predictions. In Joint European Conference on Machine Learning and Knowledge Discovery in Databases (ECML-PKDD), 2020.

[3] Han, S., Hu, X., Huang, H., Jiang, M. and Zhao, Y., 2022. ADBench: Anomaly Detection Benchmark. arXiv preprint arXiv:2206.09426.

[4] Zhao, Y., Hu, X., Cheng, C., Wang, C., Wan, C., Wang, W., Yang, J., Bai, H., Li, Z., Xiao, C., Wang, Y., Qiao, Z., Sun, J. and Akoglu, L. (2021). SUOD: Accelerating Large-scale Unsupervised Heterogeneous Outlier Detection. Conference on Machine Learning and Systems (MLSys).

pyod dependencies

joblib matplotlib

FAQs

What is pyod?

A Comprehensive and Scalable Python Library for Outlier Detection (Anomaly Detection). Visit Snyk Advisor to see a full health score report for pyod, including popularity, security, maintenance & community analysis.

Is pyod popular?

The python package pyod receives a total of 199,091 weekly downloads. As such, pyod popularity was classified as an influential project. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is pyod well maintained?

We found indications that pyod maintenance is sustainable demonstrating some project activity. We saw a total of 50 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is pyod safe to use?

While scanning the latest version of pyod, we found that a security review is needed. A total of 0 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 21 December-2024, at 14:40 (UTC).

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