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How to use the pyfaidx.__init__.IndexNotFoundError function in pyfaidx

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github mdshw5 / pyfaidx / pyfaidx / __init__.py View on Github external
elif self.duplicate_action == "longest":
                                if len(rec) > len(self.index[key]):
                                    self.index[key] = rec
                            elif self.duplicate_action == "shortest":
                                if len(rec) < len(self.index[key]):
                                    self.index[key] = rec
                            elif self.duplicate_action == "drop":
                                if key not in drop_keys:
                                    drop_keys.append(key)
                        else:
                            self.index[key] = rec
                    prev_bend = bend
            for dup in drop_keys:
                self.index.pop(dup, None)
        except IOError:
            raise IndexNotFoundError(
                "Could not read index file %s" % self.indexname)

pyfaidx

pyfaidx: efficient pythonic random access to fasta subsequences

GitHub
BSD-3-Clause
Latest version published 4 months ago

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