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How to use the pomoxis.summary_from_stats.qscore function in pomoxis

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nanoporetech / pomoxis / pomoxis / common_errors_from_bam.py View on Github

def get_qscores(counts, ref_len):
    return {
        'Q(acc)': qscore(sum(counts.values()) / ref_len),
        'Q(iden)': qscore(counts['sub'] / (ref_len - counts['del'])),
        'Q(ins)': qscore(counts['ins'] / ref_len),
        'Q(del)': qscore(counts['del'] / ref_len),
    }