How to use the petab.get_default_parameter_file_name function in petab

To help you get started, we’ve selected a few petab examples, based on popular ways it is used in public projects.

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ICB-DCM / AMICI / python / amici / petab_import.py View on Github

'Specifying -[smcp] will override defaults')

    args = parser.parse_args()

    if args.model_name:
        if not args.sbml_file_name:
            args.sbml_file_name = petab.get_default_sbml_file_name(
                args.model_name)
        if not args.measurement_file_name:
            args.measurement_file_name = \
                petab.get_default_measurement_file_name(args.model_name)
        if not args.condition_file_name:
            args.condition_file_name = petab.get_default_condition_file_name(
                args.model_name)
        if not args.parameter_file_name:
            args.parameter_file_name = petab.get_default_parameter_file_name(
                args.model_name)

    if not args.model_name and \
            (not args.sbml_file_name
             or not args.condition_file_name
             or not args.measurement_file_name):
        parser.error('When not specifying a model name, sbml, '
                     'condition and measurement file must be specified')

    return args

ICB-DCM / AMICI / python / bin / amici_import_petab.py View on Github

'Specifying -[smcp] will override defaults')

    args = parser.parse_args()

    if args.model_name:
        if not args.sbml_file_name:
            args.sbml_file_name = petab.get_default_sbml_file_name(
                args.model_name)
        if not args.measurement_file_name:
            args.measurement_file_name = \
                petab.get_default_measurement_file_name(args.model_name)
        if not args.condition_file_name:
            args.condition_file_name = petab.get_default_condition_file_name(
                args.model_name)
        if not args.parameter_file_name:
            args.parameter_file_name = petab.get_default_parameter_file_name(
                args.model_name)

    if not args.model_name and \
            (not args.sbml_file_name
             or not args.condition_file_name
             or not args.measurement_file_name):
        parser.error('When not specifying a model name, sbml, '
                     'condition and measurement file must be specified')

    return args

How to use the petab.get_default_parameter_file_name function in petab

To help you get started, we’ve selected a few petab examples, based on popular ways it is used in public projects.

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