View multiqc on Snyk Open Source Advisor

Package Health Score

81 / 100

security
Security review needed
popularity
Recognized
maintenance
Healthy
community
Active

Popularity

Recognized

Total Weekly Downloads (4,097)

GitHub Stars: 1.08K
Forks: 558
Contributors: 200

Direct Usage Popularity

The PyPI package multiqc receives a total of 4,097 downloads a week. As such, we scored multiqc popularity level to be Recognized.

Based on project statistics from the GitHub repository for the PyPI package multiqc, we found that it has been starred 1,078 times.

The download numbers shown are the average weekly downloads from the last 6 weeks.

Security

Security review needed

Security and license risk for latest version

Release Date: Nov 17, 2023
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 1
C
1
H
0
M
3
L
License Risk: 1
H
1
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

GPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

We found a way for you to contribute to the project! Looks like multiqc is missing a security policy.

A security vulnerability was detected in an indirect dependency that is added to your project when the latest version of multiqc is installed.

We highly advise you to review these security issues.

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Maintenance

Healthy

Commit Frequency

Open Issues: 222
Open PR: 43
Last Release: 16 days ago
Last Commit: 2 days ago

Further analysis of the maintenance status of multiqc based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Healthy.

We found that multiqc demonstrates a positive version release cadence with at least one new version released in the past 3 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Active

Readme: Yes
Contributing.md: Yes
Code of Conduct: Yes
Contributors: 200
Funding: No

A good and healthy external contribution signal for multiqc project, which invites more than one hundred open source maintainers to collaborate on the repository.

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Package

Python Versions Compatibility: Unspecified

Age: 8 years
Latest Release: 16 days ago
Dependencies: 17 Direct / 36 Total
Versions: 31
Maintainers: 1
Wheels: OS Independent

Not sure how to use multiqc?

To help you get started, we've collected the most common ways that multiqc is being used within popular public projects.

sequana / sequana / test / multiqc / test_multiqc.py View on Github

def test_quality_control():
        report.files = {"sequana/quality_control":
            [ { 'fn': sequana_data('summary_qc.json'), 'root': '.'}]
        }
        quality_control.MultiqcModule()

View more ways to use multiqc

MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. It is written in Python and contains modules for a large number of common bioinformatics tools.

You can install MultiQC from PyPI as follows:

pip install multiqc

Then it's just a case of going to your analysis directory and running the script:

multiqc .

MultiQC will scan the specified directory ('.' is the current dir) and produce a report detailing whatever it finds.

The report is created in multiqc_report.html by default. Tab-delimited data files are created in multiqc_data/ to give easy access for downstream processing.

For more detailed instructions, run multiqc -h

See the MultiQC website for documentation and tutorial videos:

MultiQC was written by Phil Ewels () at Seqera Labs (), originally at SciLifeLab Sweden ()

multiqc dependencies

click coloredlogs future humanize importlib-metadata jinja2 markdown matplotlib networkx numpy packaging pyaml-env pyyaml requests rich rich-click spectra

FAQs

What is multiqc?

Create aggregate bioinformatics analysis reports across many samples and tools. Visit Snyk Advisor to see a full health score report for multiqc, including popularity, security, maintenance & community analysis.

Is multiqc popular?

The python package multiqc receives a total of 4,097 weekly downloads. As such, multiqc popularity was classified as a recognized. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is multiqc well maintained?

We found that multiqc demonstrated a healthy version release cadence and project activity. It has a community of 200 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is multiqc safe to use?

While scanning the latest version of multiqc, we found that a security review is needed. A total of 5 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 3 December-2023, at 09:35 (UTC).

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multiqc

Create aggregate bioinformatics analysis reports across many samples and tools For more information about how to use this package see README

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Package Health Score

Popularity

Total Weekly Downloads (4,097)

Direct Usage Popularity

Security

Security and license risk for latest version

Non-Permissive License

Maintenance

Commit Frequency

Community

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Package

Not sure how to use multiqc?

multiqc dependencies

FAQs

What is multiqc?

Is multiqc popular?

Is multiqc well maintained?

Is multiqc safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Total Weekly Downloads (4,097)

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Not sure how to use multiqc?

multiqc dependencies

FAQs

What is multiqc?

Is multiqc popular?

Is multiqc well maintained?

Is multiqc safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues