Package Health Score

59 / 100

security
No known security issues
popularity
Limited
maintenance
Sustainable
community
Limited

Popularity

Limited

GitHub Stars: 6
Forks: 6
Contributors: 6

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package multi_bioservices, we found that it has been starred 6 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Jan 16, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

GPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

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Maintenance

Sustainable

Commit Frequency

No Recent Commits

Open Issues: 23
Open PR: 2
Last Release: 10 months ago
Last Commit: 1 month ago

Further analysis of the maintenance status of multi_bioservices based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Sustainable.

We found that multi_bioservices demonstrates a positive version release cadence with at least one new version released in the past 12 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Limited

Readme: Yes
Contributing.md: No
Code of Conduct: No
Contributors: 6
Funding: No

This project has seen only 10 or less contributors.

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Package

Python Versions Compatibility: >=3.9,<4.0

Age: 10 months
Latest Release: 10 months ago
Dependencies: 3 Direct
Versions: 4
Maintainers: 1
Wheels: OS Independent

Readme

Multi Bioservices

Description

multi_bioservices is a utility package for COMO. Its purpose is to provie better multithreaded access to the Bioservices package. This is done by using ThreadPoolExecutors on the synchronous functions. Currently, the only function this package provides is a wrapper around the db2db function in Bioservices.

Installation

To install multi_bioservices, you can use pip:

pip install multi_bioservices

Usage

To use multi_bioservices, simply import the db2db function and call it with the relevant parameters

from multi_bioservices.biodbnet import db2db, InputDatabase, OutputDatabase, TaxonID

db2db(
    input_values=["1", "2", "3"],
    input_db=InputDatabase.GENE_ID,
    output_db=OutputDatabase.GENE_SYMBOL,
    taxon_id=TaxonID.HOMO_SAPIENS
)

Parameters

Parameter	Type	Required?	Default Value	Description
`input_values`	`list[str]`	Yes	N/A	The input values to convert
`input_db`	`InputDatabase`	Yes	N/A	The input type
`output_db`	`OutputDatabase` or `list[OutputDatabase]`	No	`tuple(OutputDatabase.GENE_SYMBOL.value,OutputDatabase.GENE_ID.value, OutputDatabase.CHROMOSOMAL_LOCATION.value`	The type to return
`taxon_id`	`TaxonID` or `int`	No	`TaxonID.HOMO_SAPIENS` (9606)	The taxonomy of the input type
`quiet`	`bool`	No	`False`	Should all output be suppressed?
`remove_duplicates`	`bool`	No	`False`	Should duplicates be removed from the returned dataframe?
`cache`	`bool`	No	`True`	Should cache be used?
`delay`	`int`	No	`5`	How long of a delay should be enforced if the API is accessed to quickly?
`concurrency`	`int`	No	`8` (max 20)	How many concurrent requests can be made at once?
`batch_length`	`int`	No	`300` (max 500 if `taxon_id` is `TaxonID.HOMO_SAPIENS`)	How many items should be converted at once?

Returns

multi_bioservices returns a dataframe with the input and output databases as column names. The index of the dataframe has been reset, starting at 0

An example dataframe is seen below

Index	Gene ID	Gene Symbol
0	0	-
1	1	A1BG
2	2	A2M
3	3	A2MP1
4	4	-

multi_bioservices dependencies

aiosqlite bioservices pandas

FAQs

What is multi_bioservices?

This is a multithreaded version of various BioServices functions. Visit Snyk Advisor to see a full health score report for multi_bioservices, including popularity, security, maintenance & community analysis.

Is multi_bioservices popular?

The python package multi_bioservices receives a total of 74 weekly downloads. As such, multi_bioservices popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is multi_bioservices well maintained?

We found indications that multi_bioservices maintenance is sustainable demonstrating some project activity. We saw a total of 6 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is multi_bioservices safe to use?

The python package multi_bioservices was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 13 November-2024, at 04:53 (UTC).

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multi_bioservices

This is a multithreaded version of various BioServices functions For more information about how to use this package see README

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Package Health Score

Popularity

Direct Usage Popularity

Security

Security and license risk for latest version

Non-Permissive License

Maintenance

Commit Frequency

Community

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Package

Readme

Multi Bioservices

Description

Installation

Usage

Parameters

Returns

multi_bioservices dependencies

FAQs

What is multi_bioservices?

Is multi_bioservices popular?

Is multi_bioservices well maintained?

Is multi_bioservices safe to use?

Build a secure application checklist

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Package Health Score

Direct Usage Popularity

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Commit Frequency

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Readme

Multi Bioservices

Description

Installation

Usage

Parameters

Returns

multi_bioservices dependencies

FAQs

What is multi_bioservices?

Is multi_bioservices popular?

Is multi_bioservices well maintained?

Is multi_bioservices safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

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