Package Health Score

76 / 100

security
No known security issues
popularity
Small
maintenance
Sustainable
community
Active

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Popularity

Small

GitHub Stars: 38.7K
Forks: 2.43K
Contributors: 440

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package metalo, we found that it has been starred 38,701 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Dec 22, 2023
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

MIT

Security Policy

Yes

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Maintenance

Sustainable

Commit Frequency

Open Issues: 353
Open PR: 33
Last Release: 11 months ago
Last Commit: 1 month ago

Further analysis of the maintenance status of metalo based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Sustainable.

We found that metalo demonstrates a positive version release cadence with at least one new version released in the past 12 months.

In the past month we didn't find any pull request activity or change in issues status has been detected for the GitHub repository.

Community

Active

Readme: Yes
Contributing.md: Yes
Code of Conduct: Yes
Contributors: 440
Funding: No

A good and healthy external contribution signal for metalo project, which invites more than one hundred open source maintainers to collaborate on the repository.

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Package

Python Versions Compatibility: >=3.9

Age: 2 years
Latest Release: 11 months ago
Dependencies: 0 Direct
Versions: 13
Maintainers: 1
Wheels: OS Independent

Readme

MetaLo is a framework for the Metabolic analysis (FBA) of Logical models extracted automatically from detailed mechanistic maps. See this published article for more details.

Install

Metalo is provided as a Python3 package, you can install it from the Python package index with pip, conda or your Python package manager of choice:

$ python3 -m pip install metalo

If you want to use the GUI you will need to explicitly request that feature, but it depends on wxPython which sometimes fails to build on some platformes.

$ python3 -m pip install metalo[gui]

Command-line usage

A video tutorial is available here.

Or follow the instructions:

$ metalo --help

usage: metalo [-h] [-v] [-D] [-f] [-i INIT] [-c CASQ] MAP METABOLISM

Metabolic analysis of Logical models extracted from maps. Copyright (C) 2023 Sahar.Aghakhani@inria.fr and Sylvain.Soliman@inria.fr
GPLv3

positional arguments:
MAP                   CellDesigner file containing the mechanistic map
METABOLISM            MitoCore style metabolic model

options:
-h, --help            show this help message and exit
-v, --version         show program's version number and exit
-D, --debug           display some debug information
-f, --fva             run FVA to get interval of values
-i INIT, --init INIT  CSV file with forced initial values for the Logic model
-c CASQ, --casq CASQ  Additional arguments for CaSQ like -u, -d or -r

Or run metalo with no arguments to launch the GUI, if it is installed.

FAQs

What is metalo?

Metabolic analysis of Logical models extracted from maps. Visit Snyk Advisor to see a full health score report for metalo, including popularity, security, maintenance & community analysis.

Is metalo popular?

The python package metalo receives a total of 108 weekly downloads. As such, metalo popularity was classified as small. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is metalo well maintained?

We found indications that metalo maintenance is sustainable demonstrating some project activity. We saw a total of 440 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is metalo safe to use?

The python package metalo was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 30 October-2024, at 17:41 (UTC).

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metalo

Metabolic analysis of Logical models extracted from maps For more information about how to use this package see README

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Package

Readme

Install

Command-line usage

FAQs

What is metalo?

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Is metalo well maintained?

Is metalo safe to use?

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Readme

Install

Command-line usage

FAQs

What is metalo?

Is metalo popular?

Is metalo well maintained?

Is metalo safe to use?

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Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

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