How to use the kmapper.GraphNerve function in kmapper

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github scikit-tda / kepler-mapper / test / test_nerve.py View on Github external
def test_pass_through_result(self):
        nerve = GraphNerve()
        groups = {"a": [1], "b": [2]}

        res = dict()
        links, _ = nerve.compute(groups)

        assert res == links
github scikit-tda / kepler-mapper / test / test_nerve.py View on Github external
def test_simplices(self):
        nerve = GraphNerve()
        groups = {"a": [1, 2, 3, 4], "b": [1, 2, 5], "c": [1, 5, 6, 7]}
        links, simplices = nerve.compute(groups)

        simplices = [set(s) for s in simplices]
        assert {"a", "b"} in simplices
        assert {"a", "b", "c"} not in simplices
        assert max([len(s) for s in simplices]) == 2
        assert len([n for n in simplices if len(n) == 1]) == 3
        assert len([n for n in simplices if len(n) == 2]) == 3
github scikit-tda / kepler-mapper / test / test_nerve.py View on Github external
def test_graphnerve(self):
        nerve = GraphNerve()

        groups = {"a": [1, 2, 3, 4], "b": [1, 2, 5], "c": [5, 6, 7]}
        links, simplices = nerve.compute(groups)

        # all vertices are simplices
        assert all([[k] in simplices for k in groups])

        # graph should be a -- b -- c
        assert "c" not in links["a"] and "a" not in links["c"]
        assert "b" in links["a"] or "a" in links["b"]
        assert "c" in links["b"] or "b" in links["c"]
github scikit-tda / kepler-mapper / test / test_nerve.py View on Github external
def test_finds_a_link(self):
        nerve = GraphNerve()
        groups = {"a": [1, 2, 3, 4], "b": [1, 2, 3, 4]}
        links, _ = nerve.compute(groups)

        assert "a" in links or "b" in links
        assert links["a"] == ["b"] or links["b"] == ["a"]
github scikit-tda / kepler-mapper / test / test_nerve.py View on Github external
def test_min_intersection(self):
        nerve = GraphNerve(min_intersection=2)

        groups = {"a": [1, 2, 3, 4], "b": [1, 2, 5], "c": [5, 6, 7]}
        links, simplices = nerve.compute(groups)

        # all vertices are simplices
        assert all([[k] in simplices for k in groups])

        # graph should be a -- b    c
        assert "c" not in links["a"] and "a" not in links["c"]
        assert "b" in links["a"] or "a" in links["b"]
        assert "c" not in links["b"] and "b" not in links["c"]
github scikit-tda / kepler-mapper / test / test_nerve.py View on Github external
def test_no_link(self):
        nerve = GraphNerve()
        groups = {"a": [1, 2, 3, 4], "b": [5, 6, 7]}

        links, _ = nerve.compute(groups)
        assert not links