How to use the jsonmodels.fields.FloatField function in jsonmodels

data = fields.IntField()
    first = fields.EmbeddedField('Primary')


def test_generate_circular_schema():
    schema = Primary.to_json_schema()

    pattern = get_fixture('schema_circular.json')
    assert compare_schemas(pattern, schema) is True


class File(models.Base):

    name = fields.StringField()
    size = fields.FloatField()


class Directory(models.Base):

    name = fields.StringField()
    children = fields.ListField(['Directory', File])


class Filesystem(models.Base):

    name = fields.StringField()
    children = fields.ListField([Directory, File])


def test_generate_circular_schema2():
    schema = Filesystem.to_json_schema()

hom_asj = fields.IntField(help_text="Number of Homozygotes Ashkenazi Jewish", required=False, nullable=True)
    hom_eas = fields.IntField(help_text="Number of Homozygotes East Asian", required=False, nullable=True)
    hom_fin = fields.IntField(help_text="Number of Homozygotes European (Finnish)", required=False, nullable=True)
    hom_nfe = fields.IntField(help_text="Number of Homozygotes European (Non-Finnish)", required=False, nullable=True)
    hom_oth = fields.IntField(help_text="Number of Homozygotes Other", required=False, nullable=True)
    hom_male = fields.IntField(help_text="Number of Homozygotes Male", required=False, nullable=True)
    hom_female = fields.IntField(help_text="Number of Homozygotes Female", required=False, nullable=True)
    af_afr = fields.FloatField(help_text="Allele Frequency African", required=False, nullable=True)
    af_amr = fields.FloatField(help_text="Allele Frequency American", required=False, nullable=True)
    af_asj = fields.FloatField(help_text="Allele Frequency Ashkenazi Jewish", required=False, nullable=True)
    af_eas = fields.FloatField(help_text="Allele Frequency East Asian", required=False, nullable=True)
    af_fin = fields.FloatField(help_text="Allele Frequency European (Finnish)", required=False, nullable=True)
    af_nfe = fields.FloatField(help_text="Allele Frequency European (Non-Finnish)", required=False, nullable=True)
    af_oth = fields.FloatField(help_text="Allele Frequency Other", required=False, nullable=True)
    af_male = fields.FloatField(help_text="Allele Frequency Male", required=False, nullable=True)
    af_female = fields.FloatField(help_text="Allele Frequency Female", required=False, nullable=True)
    main_data = fields.StringField(help_text="Main data point", required=False, nullable=True)

hom_sas = fields.IntField(help_text="Number of Homozygotes South Asian", required=False, nullable=True)
    hom_male = fields.IntField(help_text="Number of Homozygotes Male", required=False, nullable=True)
    hom_female = fields.IntField(help_text="Number of Homozygotes Female", required=False, nullable=True)
    hemi_afr = fields.IntField(help_text="Number of Hemizygotes African", required=False, nullable=True)
    hemi_amr = fields.IntField(help_text="Number of Hemizygotes American", required=False, nullable=True)
    hemi_asj = fields.IntField(help_text="Number of Hemizygotes Ashkenazi Jewish", required=False, nullable=True)
    hemi_eas = fields.IntField(help_text="Number of Hemizygotes East Asian", required=False, nullable=True)
    hemi_fin = fields.IntField(help_text="Number of Hemizygotes European (Finnish)", required=False, nullable=True)
    hemi_nfe = fields.IntField(help_text="Number of Hemizygotes European (Non-Finnish)", required=False, nullable=True)
    hemi_oth = fields.IntField(help_text="Number of Hemizygotes Other", required=False, nullable=True)
    hemi_sas = fields.IntField(help_text="Number of Hemizygotes South Asian", required=False, nullable=True)
    af_afr = fields.FloatField(help_text="Allele Frequency African", required=False, nullable=True)
    af_amr = fields.FloatField(help_text="Allele Frequency American", required=False, nullable=True)
    af_asj = fields.FloatField(help_text="Allele Frequency Ashkenazi Jewish", required=False, nullable=True)
    af_eas = fields.FloatField(help_text="Allele Frequency East Asian", required=False, nullable=True)
    af_fin = fields.FloatField(help_text="Allele Frequency European (Finnish)", required=False, nullable=True)
    af_nfe = fields.FloatField(help_text="Allele Frequency European (Non-Finnish)", required=False, nullable=True)
    af_oth = fields.FloatField(help_text="Allele Frequency Other", required=False, nullable=True)
    af_sas = fields.FloatField(help_text="Allele Frequency South Asian", required=False, nullable=True)
    af_male = fields.FloatField(help_text="Allele Frequency Male", required=False, nullable=True)
    af_female = fields.FloatField(help_text="Allele Frequency Female", required=False, nullable=True)

ac_adj = fields.FloatField(help_text="Allele Count", required=False, nullable=True)
    an_adj = fields.FloatField(help_text="Allele Number", required=False, nullable=True)
    af = fields.FloatField(help_text="Allele Frequency", required=False, nullable=True)
    ac_afr = fields.IntField(help_text="Allele Count African", required=False, nullable=True)
    ac_amr = fields.IntField(help_text="Allele Count American", required=False, nullable=True)
    ac_asj = fields.IntField(help_text="Allele Count Ashkenazi Jewish", required=False, nullable=True)
    ac_eas = fields.IntField(help_text="Allele Count East Asian", required=False, nullable=True)
    ac_fin = fields.IntField(help_text="Allele Count European (Finnish)", required=False, nullable=True)
    ac_nfe = fields.IntField(help_text="Allele Count European (Non-Finnish)", required=False, nullable=True)
    ac_oth = fields.IntField(help_text="Allele Count Other", required=False, nullable=True)
    ac_male = fields.IntField(help_text="Allele Count Male", required=False, nullable=True)
    ac_female = fields.IntField(help_text="Allele Count Female", required=False, nullable=True)
    hom = fields.IntField(help_text="Number of Homozygotes", required=False, nullable=True)
    hemi = fields.IntField(help_text="Number of Hemizygotes", required=False, nullable=True)
    ac_hom = fields.FloatField(help_text="Number of Homozygotes", required=False, nullable=True)
    ac_hemi = fields.FloatField(help_text="Number of Hemizygotes", required=False, nullable=True)
    an_afr = fields.IntField(help_text="Allele Number African", required=False, nullable=True)
    an_amr = fields.IntField(help_text="Allele Number American", required=False, nullable=True)
    an_asj = fields.IntField(help_text="Allele Number Ashkenazi Jewish", required=False, nullable=True)
    an_eas = fields.IntField(help_text="Allele Number East Asian", required=False, nullable=True)
    an_fin = fields.IntField(help_text="Allele Number European (Finnish)", required=False, nullable=True)
    an_nfe = fields.IntField(help_text="Allele Number European (Non-Finnish)", required=False, nullable=True)
    an_oth = fields.IntField(help_text="Allele Number Other", required=False, nullable=True)
    an_male = fields.IntField(help_text="Allele Number Male", required=False, nullable=True)
    an_female = fields.IntField(help_text="Allele Number Female", required=False, nullable=True)
    hom_afr = fields.IntField(help_text="Number of Homozygotes African", required=False, nullable=True)
    hom_amr = fields.IntField(help_text="Number of Homozygotes American", required=False, nullable=True)
    hom_asj = fields.IntField(help_text="Number of Homozygotes Ashkenazi Jewish", required=False, nullable=True)
    hom_eas = fields.IntField(help_text="Number of Homozygotes East Asian", required=False, nullable=True)
    hom_fin = fields.IntField(help_text="Number of Homozygotes European (Finnish)", required=False, nullable=True)
    hom_nfe = fields.IntField(help_text="Number of Homozygotes European (Non-Finnish)", required=False, nullable=True)
    hom_oth = fields.IntField(help_text="Number of Homozygotes Other", required=False, nullable=True)

an_fin = fields.IntField(help_text="Allele Number European (Finnish)", required=False, nullable=True)
    an_nfe = fields.IntField(help_text="Allele Number European (Non-Finnish)", required=False, nullable=True)
    an_oth = fields.IntField(help_text="Allele Number Other", required=False, nullable=True)
    an_male = fields.IntField(help_text="Allele Number Male", required=False, nullable=True)
    an_female = fields.IntField(help_text="Allele Number Female", required=False, nullable=True)
    hom_afr = fields.IntField(help_text="Number of Homozygotes African", required=False, nullable=True)
    hom_amr = fields.IntField(help_text="Number of Homozygotes American", required=False, nullable=True)
    hom_asj = fields.IntField(help_text="Number of Homozygotes Ashkenazi Jewish", required=False, nullable=True)
    hom_eas = fields.IntField(help_text="Number of Homozygotes East Asian", required=False, nullable=True)
    hom_fin = fields.IntField(help_text="Number of Homozygotes European (Finnish)", required=False, nullable=True)
    hom_nfe = fields.IntField(help_text="Number of Homozygotes European (Non-Finnish)", required=False, nullable=True)
    hom_oth = fields.IntField(help_text="Number of Homozygotes Other", required=False, nullable=True)
    hom_male = fields.IntField(help_text="Number of Homozygotes Male", required=False, nullable=True)
    hom_female = fields.IntField(help_text="Number of Homozygotes Female", required=False, nullable=True)
    af_afr = fields.FloatField(help_text="Allele Frequency African", required=False, nullable=True)
    af_amr = fields.FloatField(help_text="Allele Frequency American", required=False, nullable=True)
    af_asj = fields.FloatField(help_text="Allele Frequency Ashkenazi Jewish", required=False, nullable=True)
    af_eas = fields.FloatField(help_text="Allele Frequency East Asian", required=False, nullable=True)
    af_fin = fields.FloatField(help_text="Allele Frequency European (Finnish)", required=False, nullable=True)
    af_nfe = fields.FloatField(help_text="Allele Frequency European (Non-Finnish)", required=False, nullable=True)
    af_oth = fields.FloatField(help_text="Allele Frequency Other", required=False, nullable=True)
    af_male = fields.FloatField(help_text="Allele Frequency Male", required=False, nullable=True)
    af_female = fields.FloatField(help_text="Allele Frequency Female", required=False, nullable=True)
    main_data = fields.StringField(help_text="Main data point", required=False, nullable=True)

# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

from jsonmodels import models, fields

__author__ = "ckopanos"


class ExAC(models.Base):
    version = fields.StringField(help_text="Version")
    ac = fields.IntField(help_text="Allele Count", required=False, nullable=True)
    an = fields.IntField(help_text="Allele Number", required=False, nullable=True)
    ac_adj = fields.FloatField(help_text="Allele Count", required=False, nullable=True)
    an_adj = fields.FloatField(help_text="Allele Number", required=False, nullable=True)
    af = fields.FloatField(help_text="Allele Frequency", required=False, nullable=True)
    ac_afr = fields.IntField(help_text="Allele Count African", required=False, nullable=True)
    ac_amr = fields.IntField(help_text="Allele Count American", required=False, nullable=True)
    ac_asj = fields.IntField(help_text="Allele Count Ashkenazi Jewish", required=False, nullable=True)
    ac_eas = fields.IntField(help_text="Allele Count East Asian", required=False, nullable=True)
    ac_fin = fields.IntField(help_text="Allele Count European (Finnish)", required=False, nullable=True)
    ac_nfe = fields.IntField(help_text="Allele Count European (Non-Finnish)", required=False, nullable=True)
    ac_oth = fields.IntField(help_text="Allele Count Other", required=False, nullable=True)
    ac_sas = fields.IntField(help_text="Allele Count South Asian", required=False, nullable=True)
    ac_male = fields.IntField(help_text="Allele Count Male", required=False, nullable=True)
    ac_female = fields.IntField(help_text="Allele Count Female", required=False, nullable=True)
    hom = fields.IntField(help_text="Number of Homozygotes", required=False, nullable=True)
    hemi = fields.IntField(help_text="Number of Hemizygotes", required=False, nullable=True)
    ac_hom = fields.FloatField(help_text="Number of Homozygotes", required=False, nullable=True)
    ac_hemi = fields.FloatField(help_text="Number of Hemizygotes", required=False, nullable=True)
    an_afr = fields.IntField(help_text="Allele Number African", required=False, nullable=True)

@mf.register_model
@mf.construct_nb_db_model(
    indexes={
        'egress': 'egress_port',
    },
)
class PortPair(mf.ModelBase,
               mixins.BasicEvents,
               mixins.Topic,
               mixins.Name):
    table_name = 'sfc_portpair'

    ingress_port = df_fields.ReferenceField(l2.LogicalPort)
    egress_port = df_fields.ReferenceField(l2.LogicalPort)
    correlation_mechanism = df_fields.EnumField([CORR_NONE, CORR_MPLS])
    weight = fields.FloatField()


@mf.register_model
@mf.construct_nb_db_model(
    indexes={
        'port_pairs': 'port_pairs',
    },
)
class PortPairGroup(mf.ModelBase,
                    mixins.BasicEvents,
                    mixins.Topic,
                    mixins.Name):
    table_name = 'sfc_portpairgroup'

    port_pairs = df_fields.ReferenceListField(PortPair)

zygosity_freq = fields.ListField(items_types=(int, str, float), help_text="Zygosity frequency", required=False,
                                     nullable=True)
    tumour_origin_freq = fields.ListField(items_types=(int, str, float,), help_text="Tumour original frequency", required=False,
                                          nullable=True)
    somatic_status_freq = fields.ListField(items_types=(int, str, float), help_text="Somatic status frequency", required=False,
                                           nullable=True)
    primary_site_freq = fields.ListField(items_types=(int, str, float), help_text="Primary site frequency", required=False, nullable=True)
    description = fields.ListField(items_types=(str,), help_text="Description", required=False, nullable=True)
    accession_number = fields.ListField(items_types=(str,), help_text="Accession number", required=False, nullable=True)
    fathmm_prediction = fields.StringField(help_text="FATHMM prediction", required=False, nullable=True)
    fathmm_score = fields.FloatField(help_text="FATHMM score", required=False, nullable=True)
    num_entries = fields.IntField(help_text="Number of entries", required=False, nullable=True)
    num_samples = fields.IntField(help_text="Number of samples", required=False, nullable=True)
    gene = fields.ListField(items_types=(str,), help_text="Gene", required=False, nullable=True)

    fathmm_mkl_coding_score = fields.FloatField(help_text="FATHMM_MKL coding score", required=False, nullable=True)
    fathmm_mkl_coding_groups = fields.StringField(help_text="FATHMM_MKL coding groups", required=False, nullable=True)
    fathmm_mkl_non_coding_score = fields.FloatField(help_text="FATHMM_MKL non coding score", required=False,
                                                    nullable=True)
    fathmm_mkl_non_coding_groups = fields.StringField(help_text="FATHMM_MKL non coding groups", required=False,
                                                      nullable=True)
    whole_exome_freq = fields.ListField(items_types=(str, int, float,), help_text="Whole exome frequency", required=False,
                                        nullable=True)
    whole_genome_reseq_freq = fields.ListField(items_types=(str, int, float,), help_text="Whole genome reseq frequency",
                                               required=False, nullable=True)

    resistance_mutation = fields.ListField(items_types=(str,), help_text="Resistance mutation", required=False,
                                           nullable=True)
    drug_entries = fields.ListField(items_types=(CosmicLicensedDrugEntry,), help_text="Drug entries", required=False,
                                    nullable=True)

from jsonmodels import models, fields

__author__ = "ckopanos"


class GWASDetails(models.Base):
    gwas_symbol = fields.StringField(help_text="GWAS symbol", required=False, nullable=True)
    date = fields.StringField(help_text="Date", required=False, nullable=True)
    study = fields.StringField(help_text="Study", required=False, nullable=True)
    disease_or_trait = fields.StringField(help_text="Disease or trait", required=False, nullable=True)
    mapped_traits = fields.ListField(items_types=(str,), help_text="Mapped trait", required=False, nullable=True)
    mapped_trait_urls = fields.ListField(items_types=(str,), help_text="Mapped trait URL", required=False,
                                         nullable=True)
    strongest_snp_risk_allele = fields.StringField(help_text="Strongest SNP risk allele", required=False, nullable=True)
    odds_ratio = fields.FloatField(help_text="Odds ratio", required=False, nullable=True)
    p_value = fields.StringField(help_text="p value", required=False, nullable=True)
    confidence_range_95_low = fields.FloatField(help_text="Confidence range 95% low", required=False, nullable=True)
    confidence_range_95_high = fields.FloatField(help_text="Confidence range 95% high", required=False, nullable=True)
    confidence_comment = fields.StringField(help_text="Confidence comment", required=False, nullable=True)
    initial_sample_size = fields.StringField(help_text="Initial sample size", required=False, nullable=True)
    replication_sample_size = fields.StringField(help_text="Replication sample size", required=False, nullable=True)
    pub_med_references = fields.ListField(items_types=(int,), help_text="PubMed References", required=False,
                                          nullable=True)


class GWAS(models.Base):
    version = fields.StringField(help_text="Version")
    items = fields.ListField(help_text='Details', items_types=(GWASDetails,))

hom_female = fields.IntField(help_text="Number of Homozygotes Female", required=False, nullable=True)
    hemi_afr = fields.IntField(help_text="Number of Hemizygotes African", required=False, nullable=True)
    hemi_amr = fields.IntField(help_text="Number of Hemizygotes American", required=False, nullable=True)
    hemi_asj = fields.IntField(help_text="Number of Hemizygotes Ashkenazi Jewish", required=False, nullable=True)
    hemi_eas = fields.IntField(help_text="Number of Hemizygotes East Asian", required=False, nullable=True)
    hemi_fin = fields.IntField(help_text="Number of Hemizygotes European (Finnish)", required=False, nullable=True)
    hemi_nfe = fields.IntField(help_text="Number of Hemizygotes European (Non-Finnish)", required=False, nullable=True)
    hemi_oth = fields.IntField(help_text="Number of Hemizygotes Other", required=False, nullable=True)
    hemi_sas = fields.IntField(help_text="Number of Hemizygotes South Asian", required=False, nullable=True)
    af_afr = fields.FloatField(help_text="Allele Frequency African", required=False, nullable=True)
    af_amr = fields.FloatField(help_text="Allele Frequency American", required=False, nullable=True)
    af_asj = fields.FloatField(help_text="Allele Frequency Ashkenazi Jewish", required=False, nullable=True)
    af_eas = fields.FloatField(help_text="Allele Frequency East Asian", required=False, nullable=True)
    af_fin = fields.FloatField(help_text="Allele Frequency European (Finnish)", required=False, nullable=True)
    af_nfe = fields.FloatField(help_text="Allele Frequency European (Non-Finnish)", required=False, nullable=True)
    af_oth = fields.FloatField(help_text="Allele Frequency Other", required=False, nullable=True)
    af_sas = fields.FloatField(help_text="Allele Frequency South Asian", required=False, nullable=True)
    af_male = fields.FloatField(help_text="Allele Frequency Male", required=False, nullable=True)
    af_female = fields.FloatField(help_text="Allele Frequency Female", required=False, nullable=True)