How to use the impedance.models.circuits.elements.get_element_from_name function in impedance

To help you get started, we’ve selected a few impedance examples, based on popular ways it is used in public projects.

Secure your code as it's written. Use Snyk Code to scan source code in minutes - no build needed - and fix issues immediately.

github ECSHackWeek / impedance.py / impedance / models / circuits / circuits.py View on Github external
def get_param_names(self):
        """ Converts circuit string to names and units """

        # parse the element names from the circuit string
        names = self.circuit.replace('p', '').replace('(', '').replace(')', '')
        names = names.replace(',', '-').replace(' ', '').split('-')

        full_names, all_units = [], []
        for name in names:
            elem = get_element_from_name(name)
            num_params = check_and_eval(elem).num_params
            units = check_and_eval(elem).units
            if num_params > 1:
                for j in range(num_params):
                    full_name = '{}_{}'.format(name, j)
                    if full_name not in self.constants.keys():
                        full_names.append(full_name)
                        all_units.append(units[j])
            else:
                if name not in self.constants.keys():
                    full_names.append(name)
                    all_units.append(units[0])

        return full_names, all_units
github ECSHackWeek / impedance.py / impedance / models / circuits / fitting.py View on Github external
eval_string += "s(["
        split = series
    elif parallel is not None and len(parallel) > 1:
        eval_string += "p(["
        split = parallel

    for i, elem in enumerate(split):
        if ',' in elem or '-' in elem:
            eval_string, index = buildCircuit(elem, frequencies,
                                              *parameters,
                                              constants=constants,
                                              eval_string=eval_string,
                                              index=index)
        else:
            param_string = ""
            raw_elem = get_element_from_name(elem)
            elem_number = check_and_eval(raw_elem).num_params
            param_list = []
            for j in range(elem_number):
                if elem_number > 1:
                    current_elem = elem + '_{}'.format(j)
                else:
                    current_elem = elem

                if current_elem in constants.keys():
                    param_list.append(constants[current_elem])
                else:
                    param_list.append(parameters[index])
                    index += 1

            param_string += str(param_list)
            new = raw_elem + '(' + param_string + ',' + str(frequencies) + ')'
github ECSHackWeek / impedance.py / impedance / models / circuits / circuits.py View on Github external
def __str__(self):
        """ Defines the pretty printing of the circuit"""

        to_print = '\n'
        if self.name is not None:
            to_print += 'Name: {}\n'.format(self.name)
        to_print += 'Circuit string: {}\n'.format(self.circuit)
        to_print += "Fit: {}\n".format(self._is_fit())

        if len(self.constants) > 0:
            to_print += '\nConstants:\n'
            for name, value in self.constants.items():
                elem = get_element_from_name(name)
                units = check_and_eval(elem).units
                if '_' in name:
                    unit = units[int(name.split('_')[-1])]
                else:
                    unit = units[0]
                to_print += '  {:>5} = {:.2e} [{}]\n'.format(name, value, unit)

        names, units = self.get_param_names()
        to_print += '\nInitial guesses:\n'
        for name, unit, param in zip(names, units, self.initial_guess):
            to_print += '  {:>5} = {:.2e} [{}]\n'.format(name, param, unit)
        if self._is_fit():
            params, confs = self.parameters_, self.conf_
            to_print += '\nFit parameters:\n'
            for name, unit, param, conf in zip(names, units, params, confs):
                to_print += '  {:>5} = {:.2e}'.format(name, param)
github ECSHackWeek / impedance.py / impedance / models / circuits / fitting.py View on Github external
---------
    Need to do a better job of handling errors in fitting.
    Currently, an error of -1 is returned.

    """
    f = frequencies
    Z = impedances

    # extract the elements from the circuit
    extracted_elements = extract_circuit_elements(circuit)

    # set upper and lower bounds on a per-element basis
    if bounds is None:
        lb, ub = [], []
        for elem in extracted_elements:
            raw_element = get_element_from_name(elem)
            for i in range(check_and_eval(raw_element).num_params):
                if elem in constants or elem + '_{}'.format(i) in constants:
                    continue
                if raw_element in ['CPE', 'La'] and i == 1:
                    ub.append(1)
                else:
                    ub.append(np.inf)
                lb.append(0)
        bounds = ((lb), (ub))

    popt, pcov = curve_fit(wrapCircuit(circuit, constants), f,
                           np.hstack([Z.real, Z.imag]), p0=initial_guess,
                           method=method, bounds=bounds, maxfev=100000,
                           ftol=1E-13)

    perror = np.sqrt(np.diag(pcov))
github ECSHackWeek / impedance.py / impedance / models / circuits / fitting.py View on Github external
def calculateCircuitLength(circuit):
    length = 0
    if circuit:
        extracted_elements = extract_circuit_elements(circuit)
        for elem in extracted_elements:
            raw_element = get_element_from_name(elem)
            num_params = check_and_eval(raw_element).num_params
            length += num_params
    return length