How to use the grlc.glogging function in grlc

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github CLARIAH / grlc / src / cache.py View on Github external
#!/usr/bin/env python

# cache.py: grlc spec caching utilities
import json
import urllib.request, urllib.error, urllib.parse
import grlc.glogging as glogging

glogger = glogging.getGrlcLogger(__name__)

# Name of the cache json file
CACHE_NAME = "db-cache.json"

def init_cache():
    '''
    Initializes the grlc cache (json file)
    '''
    cache_obj = json.loads("{}")
    try:
        with open(CACHE_NAME, 'r') as cache_file:
            try:
                cache_obj = json.load(cache_file)
            except ValueError:
                print("The cache file seems to be empty, starting with flushed cache")
    except IOError:
github CLARIAH / grlc / src / projection.py View on Github external
from pythonql.parser.Preprocessor import makeProgramFromString
from six import PY3

import grlc.glogging as glogging

glogger = glogging.getGrlcLogger(__name__)

def project(dataIn, projectionScript):
    '''Programs may make use of data in the `dataIn` variable and should
    produce data on the `dataOut` variable.'''
    # We don't really need to initialize it, but we do it to avoid linter errors
    dataOut = {}
    try:
        projectionScript = str(projectionScript)
        program = makeProgramFromString(projectionScript)
        if PY3:
            loc = {
                'dataIn': dataIn,
                'dataOut': dataOut
            }
            exec(program, {}, loc)
            dataOut = loc['dataOut']
github CLARIAH / grlc / src / prov.py View on Github external
#!/usr/bin/env python

# prov.py: class generating grlc related W3C prov triples

from rdflib import Graph, URIRef, Namespace, RDF, Literal
from datetime import datetime
from subprocess import check_output
from six import PY3

# grlc modules
import grlc.static as static
import grlc.glogging as glogging

glogger = glogging.getGrlcLogger(__name__)


class grlcPROV():
    def __init__(self, user, repo):
        """
        Default constructor
        """
        self.user = user
        self.repo = repo
        self.prov_g = Graph()
        prov_uri = URIRef("http://www.w3.org/ns/prov#")
        self.prov = Namespace(prov_uri)
        self.prov_g.bind('prov', self.prov)

        self.agent = URIRef("http://{}".format(static.SERVER_NAME))
        self.entity_d = URIRef("http://{}/api/{}/{}/spec".format(static.SERVER_NAME, self.user, self.repo))
github CLARIAH / grlc / src / gquery.py View on Github external
import yaml
import json
from rdflib.plugins.sparql.parser import Query, UpdateUnit
from rdflib.plugins.sparql.processor import translateQuery
from flask import request, has_request_context
from pyparsing import ParseException
from pprint import pformat
import traceback
import re
import requests

# grlc modules
import grlc.static as static
import grlc.glogging as glogging

glogger = glogging.getGrlcLogger(__name__)

XSD_PREFIX = 'PREFIX xsd: '

import SPARQLTransformer

def guess_endpoint_uri(rq, gh_repo):
    """
    Guesses the endpoint URI from (in this order):
    - An endpoint parameter in URL
    - An #+endpoint decorator
    - A endpoint.txt file in the repo
    Otherwise assigns a default one
    """
    auth = (static.DEFAULT_ENDPOINT_USER, static.DEFAULT_ENDPOINT_PASSWORD)
    if auth == ('none', 'none'):
        auth = None
github CLARIAH / grlc / src / sparql.py View on Github external
from SPARQLWrapper import SPARQLWrapper, CSV, JSON
from flask import jsonify
from collections import defaultdict

import static as static
import grlc.glogging as glogging

glogger = glogging.getGrlcLogger(__name__)

# Default value is JSON
SUPPORTED_MIME_FORMATS = defaultdict(
    lambda: JSON, {
        'text/csv': CSV,
        'application/json': JSON
    }
)

MIME_FORMAT = {
    format: mime for mime, format in SUPPORTED_MIME_FORMATS.items()
}

def getResponseText(endpoint, query, requestedMimeType):
    '''
    endpoint - URL of sparql endpoint