View gatetools on Snyk Open Source Advisor

Package Health Score

45 / 100

security
Security review needed
popularity
Limited
maintenance
Inactive
community
Limited

Popularity

Limited

GitHub Stars: 30
Forks: 22
Contributors: 6

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package gatetools, we found that it has been starred 30 times.

Security

Security review needed

Security and license risk for latest version

Release Date: Mar 23, 2023
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
1
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

LGPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

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Maintenance

Inactive

Commit Frequency

Open Issues: 8
Open PR: 0
Last Release: 2 years ago
Last Commit: 15 days ago

Further analysis of the maintenance status of gatetools based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Inactive.

An important project maintenance signal to consider for gatetools is that it hasn't seen any new versions released to PyPI in the past 12 months, and could be considered as a discontinued project, or that which receives low attention from its maintainers.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Limited

Readme: Yes
Contributing.md: No
Code of Conduct: No
Contributors: 6
Funding: No

This project has seen only 10 or less contributors.

We found a way for you to contribute to the project! Looks like gatetools is missing a Code of Conduct.

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Package

Python Versions Compatibility: >=3.7

Age: 5 years
Latest Release: 2 years ago
Dependencies: 14 Direct / 34 Total
Versions: 27
Maintainers: 3
Wheels: OS Independent

Readme

Tools for GATE simulations.

Install with : pip install gatetools

Clone the repository with git clone --recursive https://github.com/OpenGATE/GateTools.git (or git submodule update --init to update) then cd GateTools, then pip install -e .

Example of usage:

gt_gate_info
gt_image_convert input.dcm -o output.mhd
gt_image_convert input.mhd -o output_float.mhd -p float
gt_image_arithm *.mhd -o output.mhd -O sum
gt_gamma_index dose.mhd gate-DoseToWater.mhd -o gamma.mhd --dd 2 --dta 2.5 -u "%" -T 0.2

Use the flag -h to get print the help of each tool. Here is the current list of command line tools.

Tool	Comment
`gt_affine_transform`	Resample (resize, rotate) an image
`gt_dicom_info`	Print tag values of a dicom file
`gt_dicom_rt_pbs2gate`	Convert Dicom RT proton plan for Gate
`gt_dicom_rt_struct_to_image`	Turn Dicom RT Struct contours into mask image
`gt_dvh`	Create Dose Volume Histogram
`gt_gamma_index`	Compute gamma index between images
`gt_gate_info`	Display info about current Gate/G4 version
`gt_hausdorff`	Compute Hausdorff distance
`gt_image_arithm`	Pixel- or voxel-wise arithmetic operations
`gt_image_convert`	Convert image file format (dicom, mhd, hdr, nii ... )
`gt_image_crop`	Crop an image
`gt_image_gauss`	Blur an image using gaussian filter
`gt_image_resize`	Resize an image
`gt_image_statistics`	Statistics of an image
`gt_image_to_dicom_rt_struct`	Convert mask image to Dicom RTStruct
`gt_image_uncertainty`	Compute statistical uncertainty
`gt_merge_root`	Merge root files
`gt_morpho_math`	Compute morphological operation
`gt_phsp_convert`	Convert a phase space file from root to npy
`gt_phsp_info`	Display information about a phase space file
`gt_phsp_merge`	Merge two phase space files (output in npy only)
`gt_phps_peaks`	Try to detect photopeaks (experimental)
`gt_phsp_plot`	Plot marginal distributions form a phase space file
`gt_write_dicom`	Convert image (mhd, nii, ...) to dicom
`gt_digi_mac_converter`	Convert old digitizer macros to the new commands (Gate9.3)

All tools are also available to be use within your own Python script with, for example:

import gatetools as gt
gt.image_convert(inputImage, pixeltype)

Tests: run

python -m unittest gatetools -v
python -m unittest gatetools.phsp -v

Classes and function documentation. Use the following command to open a browser for documentation (it is still not very convenient ; will be improved later).

pydoc -b

For developers, please have a look at the readme_dev.md file.

gatetools dependencies

click colorama colored itk lz4 matplotlib numpy pydicom python-box scipy tqdm uproot wget xxhash

FAQs

What is gatetools?

Python tools for GATE, see https://github.com/OpenGATE/Gate. Visit Snyk Advisor to see a full health score report for gatetools, including popularity, security, maintenance & community analysis.

Is gatetools popular?

The python package gatetools receives a total of 835 weekly downloads. As such, gatetools popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is gatetools well maintained?

We found indications that gatetools is an Inactive project. See the full package health analysis to learn more about the package maintenance status.

Is gatetools safe to use?

While scanning the latest version of gatetools, we found that a security review is needed. A total of 0 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 13 November-2024, at 11:56 (UTC).

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gatetools

Python tools for GATE, see https://github.com/OpenGATE/Gate For more information about how to use this package see README

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Package Health Score

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Readme

gatetools dependencies

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Readme

gatetools dependencies

FAQs

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Is gatetools safe to use?

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