View gatetools on Snyk Open Source Advisor

Package Health Score

63 / 100

security
Security review needed
popularity
Limited
maintenance
Healthy
community
Limited

Popularity

Limited

GitHub Stars: 30
Forks: 22
Contributors: 6

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package gatetools, we found that it has been starred 30 times.

Security

Security review needed

Security and license risk for latest version

Release Date: Nov 22, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
1
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

LGPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

We found a way for you to contribute to the project! Looks like gatetools is missing a security policy.

You can connect your project's repository to Snyk to stay up to date on security alerts and receive automatic fix pull requests.

Keep your project free of vulnerabilities with Snyk

Maintenance

Healthy

Commit Frequency

Open Issues: 8
Open PR: 0
Last Release: 27 days ago
Last Commit: 27 days ago

Further analysis of the maintenance status of gatetools based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Healthy.

We found that gatetools demonstrates a positive version release cadence with at least one new version released in the past 3 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Limited

Readme: Yes
Contributing.md: No
Code of Conduct: No
Contributors: 6
Funding: No

This project has seen only 10 or less contributors.

We found a way for you to contribute to the project! Looks like gatetools is missing a Code of Conduct.

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Ensure all the packages you're using are healthy and well-maintained

Snyk Vulnerability Scanner

Get health score & security insights directly in your IDE

Package

Python Versions Compatibility: >=3.7

Age: 5 years
Latest Release: 27 days ago
Dependencies: 13 Direct / 34 Total
Versions: 30
Maintainers: 3
Wheels: OS Independent

Readme

Tools for GATE simulations.

Install with : pip install gatetools

Clone the repository with git clone --recursive https://github.com/OpenGATE/GateTools.git (or git submodule update --init to update) then cd GateTools, then pip install -e .

Example of usage:

gt_gate_info
gt_image_convert input.dcm -o output.mhd
gt_image_convert input.mhd -o output_float.mhd -p float
gt_image_arithm *.mhd -o output.mhd -O sum
gt_gamma_index dose.mhd gate-DoseToWater.mhd -o gamma.mhd --dd 2 --dta 2.5 -u "%" -T 0.2

Use the flag -h to get print the help of each tool. Here is the current list of command line tools.

Tool	Comment
`gt_affine_transform`	Resample (resize, rotate) an image
`gt_dicom_info`	Print tag values of a dicom file
`gt_dicom_rt_pbs2gate`	Convert Dicom RT proton plan for Gate
`gt_dicom_rt_struct_to_image`	Turn Dicom RT Struct contours into mask image
`gt_dvh`	Create Dose Volume Histogram
`gt_gamma_index`	Compute gamma index between images
`gt_gate_info`	Display info about current Gate/G4 version
`gt_hausdorff`	Compute Hausdorff distance
`gt_image_arithm`	Pixel- or voxel-wise arithmetic operations
`gt_image_convert`	Convert image file format (dicom, mhd, hdr, nii ... )
`gt_image_crop`	Crop an image
`gt_image_gauss`	Blur an image using gaussian filter
`gt_image_resize`	Resize an image
`gt_image_statistics`	Statistics of an image
`gt_image_to_dicom_rt_struct`	Convert mask image to Dicom RTStruct
`gt_image_uncertainty`	Compute statistical uncertainty
`gt_merge_root`	Merge root files
`gt_morpho_math`	Compute morphological operation
`gt_phsp_convert`	Convert a phase space file from root to npy
`gt_phsp_info`	Display information about a phase space file
`gt_phsp_merge`	Merge two phase space files (output in npy only)
`gt_phps_peaks`	Try to detect photopeaks (experimental)
`gt_phsp_plot`	Plot marginal distributions form a phase space file
`gt_write_dicom`	Convert image (mhd, nii, ...) to dicom
`gt_digi_mac_converter`	Convert old digitizer macros to the new commands (Gate9.3)

All tools are also available to be use within your own Python script with, for example:

import gatetools as gt
gt.image_convert(inputImage, pixeltype)

Tests: run

python -m unittest gatetools -v
python -m unittest gatetools.phsp -v

Classes and function documentation. Use the following command to open a browser for documentation (it is still not very convenient ; will be improved later).

pydoc -b

For developers, please have a look at the readme_dev.md file.

gatetools dependencies

click colorama colored lz4 matplotlib numpy pydicom python-box scipy tqdm uproot wget xxhash

FAQs

What is gatetools?

Python tools for GATE, see https://github.com/OpenGATE/Gate. Visit Snyk Advisor to see a full health score report for gatetools, including popularity, security, maintenance & community analysis.

Is gatetools popular?

The python package gatetools receives a total of 835 weekly downloads. As such, gatetools popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is gatetools well maintained?

We found that gatetools demonstrated a healthy version release cadence and project activity. It has a community of 6 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is gatetools safe to use?

While scanning the latest version of gatetools, we found that a security review is needed. A total of 0 vulnerabilities or license issues were detected. See the full security scan results.

Last updated on 5 December-2024, at 04:56 (UTC).

Build a secure application checklist

Select a recommended open source package

Minimize your risk by selecting secure & well maintained open source packages

DONE

Scan your app for vulnerabilities

Scan your application to find vulnerabilities in your: source code, open source dependencies, containers and configuration files

SCAN NOW

Fix identified vulnerabilities

Easily fix your code by leveraging automatically generated PRs

AUTO FIX

Monitor for new issues

New vulnerabilities are discovered every day. Get notified if your application is affected

MONITOR APP

gatetools

Python tools for GATE, see https://github.com/OpenGATE/Gate For more information about how to use this package see README

Ensure you're using the healthiest python packages

Package Health Score

Popularity

Direct Usage Popularity

Security

Security and license risk for latest version

Non-Permissive License

Maintenance

Commit Frequency

Community

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Package

Readme

gatetools dependencies

FAQs

What is gatetools?

Is gatetools popular?

Is gatetools well maintained?

Is gatetools safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Readme

gatetools dependencies

FAQs

What is gatetools?

Is gatetools popular?

Is gatetools well maintained?

Is gatetools safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues