deeptime

v0.4.4

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation. For more information about how to use this package see README

Latest version published 2 years ago

License: LGPL-3.0

PyPI

GitHub

Package Health Score

55 / 100

security
No known security issues
popularity
Small
maintenance
Inactive
community
Sustainable

Popularity

Small

GitHub Stars: 760
Forks: 84
Contributors: 20

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package deeptime, we found that it has been starred 760 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Dec 20, 2022
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

LGPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

We found a way for you to contribute to the project! Looks like deeptime is missing a security policy.

You can connect your project's repository to Snyk to stay up to date on security alerts and receive automatic fix pull requests.

Keep your project free of vulnerabilities with Snyk

Maintenance

Inactive

Commit Frequency

Open Issues: 14
Open PR: 2
Last Release: 2 years ago
Last Commit: 1 month ago

Further analysis of the maintenance status of deeptime based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Inactive.

An important project maintenance signal to consider for deeptime is that it hasn't seen any new versions released to PyPI in the past 12 months, and could be considered as a discontinued project, or that which receives low attention from its maintainers.

In the past month we didn't find any pull request activity or change in issues status has been detected for the GitHub repository.

Community

Sustainable

Readme: Yes
Contributing.md: No
Code of Conduct: No
Contributors: 20
Funding: No

With more than 10 contributors for the deeptime repository, this is possibly a sign for a growing and inviting community.

We found a way for you to contribute to the project! Looks like deeptime is missing a Code of Conduct.

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Ensure all the packages you're using are healthy and well-maintained

Snyk Vulnerability Scanner

Get health score & security insights directly in your IDE

Package

Python Versions Compatibility: >=3.8

Age: 7 years
Latest Release: 2 years ago
Dependencies: 6 Direct
Versions: 17
Maintainers: 4
Wheels: Linux, macOS, Windows

Readme

deeptime

Deeptime is a general purpose Python library offering various tools to estimate dynamical models based on time-series data including conventional linear learning methods, such as Markov State Models (MSMs), Hidden Markov Models (HMMs) and Koopman models, as well as kernel and deep learning approaches such as VAMPnets and deep MSMs. The library is largely compatible with scikit-learn, having a range of Estimator classes for these different models, but in contrast to scikit-learn also provides Model classes, e.g., in the case of an MSM, which provide a multitude of analysis methods to compute interesting thermodynamic, kinetic and dynamical quantities, such as free energies, relaxation times and transition paths.

Releases:

Installation via conda recommended, pip compiles the library locally.


`conda install -c conda-forge deeptime`	`pip install deeptime`

Documentation: deeptime-ml.github.io.

Building the latest trunk version of the package:

Using pip with a local clone and pulling dependencies:

git clone https://github.com/deeptime-ml/deeptime.git

cd deeptime
pip install .

Or using pip directly on the remote:

pip install git+https://github.com/deeptime-ml/deeptime.git@main

deeptime dependencies

ninja numpy scikit-learn scipy threadpoolctl torch

FAQs

What is deeptime?

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estima... Visit Snyk Advisor to see a full health score report for deeptime, including popularity, security, maintenance & community analysis.

Is deeptime popular?

The python package deeptime receives a total of 656 weekly downloads. As such, deeptime popularity was classified as small. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is deeptime well maintained?

We found indications that deeptime is an Inactive project. See the full package health analysis to learn more about the package maintenance status.

Is deeptime safe to use?

The python package deeptime was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 23 November-2024, at 16:05 (UTC).

Build a secure application checklist

Select a recommended open source package

Minimize your risk by selecting secure & well maintained open source packages

DONE

Scan your app for vulnerabilities

Scan your application to find vulnerabilities in your: source code, open source dependencies, containers and configuration files

SCAN NOW

Fix identified vulnerabilities

Easily fix your code by leveraging automatically generated PRs

AUTO FIX

Monitor for new issues

New vulnerabilities are discovered every day. Get notified if your application is affected

MONITOR APP

Package Health Score

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Readme

deeptime

Building the latest trunk version of the package:

deeptime dependencies

FAQs

What is deeptime?

Is deeptime popular?

Is deeptime well maintained?

Is deeptime safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues