Package Health Score

76 / 100

security
No known security issues
popularity
Small
maintenance
Sustainable
community
Active

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Popularity

Small

GitHub Stars: 9.74K
Forks: 677
Contributors: 110

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package cell-bin, we found that it has been starred 9,744 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Mar 1, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

LGPL-2.1

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

We found a way for you to contribute to the project! Looks like cell-bin is missing a security policy.

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Maintenance

Sustainable

Commit Frequency

Open Issues: 63
Open PR: 9
Last Release: 9 months ago
Last Commit: 13 days ago

Further analysis of the maintenance status of cell-bin based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Sustainable.

We found that cell-bin demonstrates a positive version release cadence with at least one new version released in the past 12 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Active

Readme: Yes
Contributing.md: Yes
Code of Conduct: Yes
Contributors: 110
Funding: Yes

A good and healthy external contribution signal for cell-bin project, which invites more than one hundred open source maintainers to collaborate on the repository.

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Package

Python Versions Compatibility: ==3.8.*

Age: 1 year
Latest Release: 9 months ago
Dependencies: 13 Direct
Versions: 10
Maintainers: 1
Wheels: OS Independent

Readme

A framework for generating single-cell gene expression data

Release Notes

Installation

Both on Windows or Linux (CentOS, Ubuntu), just

pip install -r requirements.txt

Pyvips linux installation

# linux environ install pyvips using conda
conda install --channel conda-forge pyvips

Pyvips windows install vips from vips

pip install --user pyvips==2.2.1

# add vips path when running python script
import os
vipsbin = r'c:\vips-dev-8.13\bin'
os.environ['PATH'] = vipsbin + ';' + os.environ['PATH']

Develop mode

git clone https://gitlab.genomics.cn/biointelligence/implab/stero-rnd/cellbin/algorithms/cellbin.git
conda activate env # activate your env
python setup.py develop --no-deps  # develop mode, if you already have deps installed

Usage

API doc
How to get weights?

contribute

We love your input! We want to make contributing to cellbin as easy and transparent as possible. Please see,

When you need to change other people's modules, remember to note the change information in the change location. like, a = 0 # parameter value to zero [by jack]

Thank you to all our contributors!

Contact

For cellbin bugs and feature requests please visit

cell-bin dependencies

h5py imagecodecs matplotlib numpy onnxruntime opencv-python pandas pyvips requests scikit-image scikit-learn tifffile tqdm

FAQs

What is cell-bin?

A framework for generating single-cell gene expression data. Visit Snyk Advisor to see a full health score report for cell-bin, including popularity, security, maintenance & community analysis.

Is cell-bin popular?

The python package cell-bin receives a total of 207 weekly downloads. As such, cell-bin popularity was classified as small. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is cell-bin well maintained?

We found indications that cell-bin maintenance is sustainable demonstrating some project activity. We saw a total of 110 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is cell-bin safe to use?

The python package cell-bin was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 21 November-2024, at 01:15 (UTC).

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cell-bin

A framework for generating single-cell gene expression data For more information about how to use this package see README

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Package Health Score

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Popularity

Direct Usage Popularity

Security

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Non-Permissive License

Maintenance

Commit Frequency

Community

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Package

Readme

A framework for generating single-cell gene expression data

Installation

Develop mode

Usage

contribute

Contact

cell-bin dependencies

FAQs

What is cell-bin?

Is cell-bin popular?

Is cell-bin well maintained?

Is cell-bin safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Explore Similar Packages

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Readme

A framework for generating single-cell gene expression data

Installation

Develop mode

Usage

contribute

Contact

cell-bin dependencies

FAQs

What is cell-bin?

Is cell-bin popular?

Is cell-bin well maintained?

Is cell-bin safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues