How to use the autoprotocol.instruction.LiquidHandle.builders.transport function in autoprotocol

To help you get started, we’ve selected a few autoprotocol examples, based on popular ways it is used in public projects.

Secure your code as it's written. Use Snyk Code to scan source code in minutes - no build needed - and fix issues immediately.

github autoprotocol / autoprotocol-python / autoprotocol / liquid_handle / liquid_handle_method.py View on Github external
the name of the liquid class being dispensed
        density : Unit, optional
            the density of liquid to be dispensed
        """

        followup_z = self._move_to_initial_position(position_x, position_y, initial_z)

        mode_params = LiquidHandle.builders.mode_params(
            position_x=position_x,
            position_y=position_y,
            position_z=followup_z,
            liquid_class=liquid_class,
        )

        self._transports += [
            LiquidHandle.builders.transport(
                volume=volume,
                density=density,
                pump_override_volume=calibrated_vol if calibrated_vol else None,
                flowrate=flowrate,
                mode_params=mode_params,
                delay_time=delay_time,
            )
github autoprotocol / autoprotocol-python / autoprotocol / liquid_handle / liquid_handle_method.py View on Github external
the name of the liquid class being aspirated
        density : Unit, optional
            the density of liquid being aspirated
        """

        followup_z = self._move_to_initial_position(position_x, position_y, initial_z)

        mode_params = LiquidHandle.builders.mode_params(
            position_x=position_x,
            position_y=position_y,
            position_z=followup_z,
            liquid_class=liquid_class,
        )

        self._transports += [
            LiquidHandle.builders.transport(
                volume=-volume,
                density=density,
                # pylint: disable=invalid-unary-operand-type
                pump_override_volume=-calibrated_vol if calibrated_vol else None,
                flowrate=flowrate,
                mode_params=mode_params,
                delay_time=delay_time,
            )
github autoprotocol / autoprotocol-python / autoprotocol / liquid_handle / liquid_handle_method.py View on Github external
Returns
        -------
        dict
            followup z position to pipette at after initial movement

        See Also
        --------
        _move_to_well_top_before_lld : helper method
        _get_followup_z : helper method
        """
        self._move_to_well_top_before_lld(position_z)

        if any([position_z, position_x, position_y]):
            self._transports += [
                LiquidHandle.builders.transport(
                    mode_params=LiquidHandle.builders.mode_params(
                        position_x=position_x,
                        position_y=position_y,
                        position_z=position_z,
                    )
                )
            ]

        followup_z = self._get_followup_z(position_z)

        return followup_z
github autoprotocol / autoprotocol-python / autoprotocol / liquid_handle / liquid_handle_method.py View on Github external
def _move_to_well_top_before_lld(self, position_z):
        """If position_z contains any liquid sensing moves to well top

        Parameters
        ----------
        position_z : dict
            position_z to be checked for lld events
        """
        well_top_z = LiquidHandle.builders.transport(
            mode_params=LiquidHandle.builders.mode_params(
                position_z=LiquidHandle.builders.position_z(reference="well_top")
            )
        )

        if position_z:
            if position_z.get("reference") == "liquid_surface":
                if position_z.get("detection", {}).get("method") != "tracked":
                    self._transports.append(well_top_z)
github autoprotocol / autoprotocol-python / autoprotocol / liquid_handle / liquid_handle_method.py View on Github external
time to pause after dispensing to let pressure equilibrate
        liquid_class : str, optional
            the name of the liquid class being dispensed
        """

        followup_z = self._move_to_initial_position(position_x, position_y, initial_z)

        mode_params = LiquidHandle.builders.mode_params(
            position_x=position_x,
            position_y=position_y,
            position_z=followup_z,
            liquid_class=liquid_class,
        )

        self._transports += [
            LiquidHandle.builders.transport(
                volume=-volume,
                flowrate=asp_flowrate,
                mode_params=mode_params,
                delay_time=delay_time,
            ),
            LiquidHandle.builders.transport(
                volume=volume,
                flowrate=dsp_flowrate,
                mode_params=mode_params,
                delay_time=delay_time,
            ),
        ] * repetitions