How to use the allensdk.api.queries.tree_search_api.TreeSearchApi function in allensdk

To help you get started, we’ve selected a few allensdk examples, based on popular ways it is used in public projects.

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github BrancoLab / BrainRender / brainrender / atlases / mouse.py View on Github external
# get reference space
        self.space = ReferenceSpaceApi()
        self.spacecache = ReferenceSpaceCache(
            manifest=os.path.join(
                self.annotated_volume_fld, "manifest.json"
            ),  # downloaded files are stored relative to here
            resolution=self.resolution,
            reference_space_key="annotation/ccf_2017",  # use the latest version of the CCF
        )
        self.annotated_volume, _ = self.spacecache.get_annotation_volume()

        # mouse connectivity API [used for tractography]
        self.mca = MouseConnectivityApi()

        # Get tree search api
        self.tree_search = TreeSearchApi()
github BrancoLab / BrainRender / brainrender / atlases / aba.py View on Github external
# get reference space
        self.space = ReferenceSpaceApi()
        self.spacecache = ReferenceSpaceCache(
            manifest=os.path.join(
                self.annotated_volume_fld, "manifest.json"
            ),  # downloaded files are stored relative to here
            resolution=int(self.resolution[0]),
            reference_space_key="annotation/ccf_2017",  # use the latest version of the CCF
        )
        self.annotated_volume, _ = self.spacecache.get_annotation_volume()

        # mouse connectivity API [used for tractography]
        self.mca = MouseConnectivityApi()

        # Get tree search api
        self.tree_search = TreeSearchApi()