alibi

To help you get started, we've collected the most common ways that alibi is being used within popular public projects.

SeldonIO / alibi / alibi / explainers / cfproto.py View on Github

if self.enc_model:
            enc_data = self.enc.predict(train_data)
            self.class_proto = {}  # type: dict
            self.class_enc = {}  # type: dict
            for i in range(self.classes):
                idx = np.where(preds == i)[0]
                self.class_proto[i] = np.expand_dims(np.mean(enc_data[idx], axis=0), axis=0)
                self.class_enc[i] = enc_data[idx]
        elif self.use_kdtree:
            logger.warning('No encoder specified. Using k-d trees to represent class prototypes.')
            if trustscore_kwargs is not None:
                ts = TrustScore(**trustscore_kwargs)
            else:
                ts = TrustScore()
            if self.is_cat:  # map categorical to numerical data
                train_data = ord_to_num(train_data_ord, self.d_abs)
            ts.fit(train_data, preds, classes=self.classes)
            self.kdtrees = ts.kdtrees
            self.X_by_class = ts.X_kdtree

View more ways to use alibi

Alibi is an Python library aimed at machine learning model inspection and interpretation. The focus of the library is to provide high-quality implementations of black-box, white-box, local and global explanation methods for classification and regression models.

• Documentation

If you're interested in outlier detection, concept drift or adversarial instance detection, check out our sister project alibi-detect.

Anchor explanations for images	Integrated Gradients for text
Counterfactual examples	Accumulated Local Effects

Table of Contents

• Installation and Usage
• Supported Methods
  • Model Explanations
  • Model Confidence
  • Prototypes
  • References and Examples
• Citations

Installation and Usage

Alibi can be installed from:

• PyPI or GitHub source (with pip)
• Anaconda (with conda/mamba)

With pip

• Alibi can be installed from PyPI:

  pip install alibi
  

• Alternatively, the development version can be installed:

  pip install git+https://github.com/SeldonIO/alibi.git 
  

• To take advantage of distributed computation of explanations, install alibi with ray:

  pip install alibi[ray]
  

• For SHAP support, install alibi as follows:

  pip install alibi[shap]
  

With conda

To install from conda-forge it is recommended to use mamba, which can be installed to the base conda enviroment with:

conda install mamba -n base -c conda-forge

• For the standard Alibi install:

  mamba install -c conda-forge alibi
  

• For distributed computing support:

  mamba install -c conda-forge alibi ray
  

• For SHAP support:

  mamba install -c conda-forge alibi shap
  

Usage

The alibi explanation API takes inspiration from scikit-learn, consisting of distinct initialize, fit and explain steps. We will use the AnchorTabular explainer to illustrate the API:

from alibi.explainers import AnchorTabular

# initialize and fit explainer by passing a prediction function and any other required arguments
explainer = AnchorTabular(predict_fn, feature_names=feature_names, category_map=category_map)
explainer.fit(X_train)

# explain an instance
explanation = explainer.explain(x)

The explanation returned is an Explanation object with attributes meta and data. meta is a dictionary containing the explainer metadata and any hyperparameters and data is a dictionary containing everything related to the computed explanation. For example, for the Anchor algorithm the explanation can be accessed via explanation.data['anchor'] (or explanation.anchor). The exact details of available fields varies from method to method so we encourage the reader to become familiar with the types of methods supported.

Supported Methods

The following tables summarize the possible use cases for each method.

Model Explanations

Model Confidence

These algorithms provide instance-specific scores measuring the model confidence for making a particular prediction.

Key:

• BB - black-box (only require a prediction function)
• BB* - black-box but assume model is differentiable
• WB - requires white-box model access. There may be limitations on models supported
• TF/Keras - TensorFlow models via the Keras API
• Local - instance specific explanation, why was this prediction made?
• Global - explains the model with respect to a set of instances
• (1) - depending on model
• (2) - may require dimensionality reduction

Prototypes

These algorithms provide a distilled view of the dataset and help construct a 1-KNN interpretable classifier.

References and Examples

• Accumulated Local Effects (ALE, Apley and Zhu, 2016)

  • Documentation
  • Examples: California housing dataset, Iris dataset

• Partial Dependence (J.H. Friedman, 2001)

  • Documentation
  • Examples: Bike rental

• Partial Dependence Variance(Greenwell et al., 2018)

  • Documentation
  • Examples: Friedman’s regression problem

• Permutation Importance(Breiman, 2001; Fisher et al., 2018)

  • Documentation
  • Examples: Who's Going to Leave Next?

• Anchor explanations (Ribeiro et al., 2018)

  • Documentation
  • Examples: income prediction, Iris dataset, movie sentiment classification, ImageNet, fashion MNIST

• Contrastive Explanation Method (CEM, Dhurandhar et al., 2018)

  • Documentation
  • Examples: MNIST, Iris dataset

• Counterfactual Explanations (extension of Wachter et al., 2017)

  • Documentation
  • Examples: MNIST

• Counterfactual Explanations Guided by Prototypes (Van Looveren and Klaise, 2019)

  • Documentation
  • Examples: MNIST, California housing dataset, Adult income (one-hot), Adult income (ordinal)

• Model-agnostic Counterfactual Explanations via RL(Samoilescu et al., 2021)

  • Documentation
  • Examples: MNIST, Adult income

• Integrated Gradients (Sundararajan et al., 2017)

  • Documentation,
  • Examples: MNIST example, Imagenet example, IMDB example.

• Kernel Shapley Additive Explanations (Lundberg et al., 2017)

  • Documentation
  • Examples: SVM with continuous data, multinomial logistic regression with continous data, handling categorical variables

• Tree Shapley Additive Explanations (Lundberg et al., 2020)

  • Documentation
  • Examples: Interventional (adult income, xgboost), Path-dependent (adult income, xgboost)

• Trust Scores (Jiang et al., 2018)

  • Documentation
  • Examples: MNIST, Iris dataset

• Linearity Measure

  • Documentation
  • Examples: Iris dataset, fashion MNIST

• ProtoSelect

  • Documentation
  • Examples: Adult Census & CIFAR10

• Similarity explanations

  • Documentation
  • Examples: 20 news groups dataset, ImageNet dataset, MNIST dataset

Citations

If you use alibi in your research, please consider citing it.

BibTeX entry:

@article{JMLR:v22:21-0017,
  author  = {Janis Klaise and Arnaud Van Looveren and Giovanni Vacanti and Alexandru Coca},
  title   = {Alibi Explain: Algorithms for Explaining Machine Learning Models},
  journal = {Journal of Machine Learning Research},
  year    = {2021},
  volume  = {22},
  number  = {181},
  pages   = {1-7},
  url     = {http://jmlr.org/papers/v22/21-0017.html}
}