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How to use the nanocomp.utils.plot_settings function in NanoComp

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github wdecoster / nanocomp / nanocomp / NanoComp.py View on Github external
def make_plots(df, settings):
    utils.plot_settings(dict(), dpi=settings["dpi"])
    df["log length"] = np.log10(df["lengths"])
    plots = []
    plots.extend(
        compplots.output_barplot(
            df=df,
            figformat=settings["format"],
            path=settings["path"],
            title=settings["title"],
            palette=settings["colors"])
    )
    plots.extend(
        compplots.n50_barplot(
            df=df,
            figformat=settings["format"],
            path=settings["path"],
            title=settings["title"],

NanoComp

Comparing runs of Oxford Nanopore sequencing data and alignments

GitHub
MIT
Latest version published 5 months ago

Package Health Score

57 / 100
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