How to use the @single-cell-portal/igv.GenomeUtils function in @single-cell-portal/igv
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broadinstitute / single_cell_portal_core / app / javascript / components / explore / GenomeView.js View on Github 
}
igv.createBrowser(igvContainer, igvOptions)
// Log igv.js initialization in Google Analytics
ga('send', 'event', 'igv', 'initialize')
log('igv:initialize')
}
// Monkey patch getKnownGenome to remove baked-in genes track.
// We use a different gene annotation source, in a different track order,
// so removing this default gives our genome browser instance a more
// polished feel.
const originalGetKnownGenomes = igv.GenomeUtils.getKnownGenomes
igv.GenomeUtils.getKnownGenomes = function() {
return originalGetKnownGenomes.apply(this).then(reference => {
const newRef = {}
newRef['GRCm38'] = reference['mm10'] // Fix name
Object.keys(reference).forEach(key => {
delete reference[key].tracks
newRef[key] = reference[key]
})
return newRef
})
}igvOptions['search'] = searchOptions
}
igv.createBrowser(igvContainer, igvOptions)
// Log igv.js initialization in Google Analytics
ga('send', 'event', 'igv', 'initialize')
log('igv:initialize')
}
// Monkey patch getKnownGenome to remove baked-in genes track.
// We use a different gene annotation source, in a different track order,
// so removing this default gives our genome browser instance a more
// polished feel.
const originalGetKnownGenomes = igv.GenomeUtils.getKnownGenomes
igv.GenomeUtils.getKnownGenomes = function() {
return originalGetKnownGenomes.apply(this).then(reference => {
const newRef = {}
newRef['GRCm38'] = reference['mm10'] // Fix name
Object.keys(reference).forEach(key => {
delete reference[key].tracks
newRef[key] = reference[key]
})
return newRef
})
}@single-cell-portal/igv
Development fork of igv.js, for patches before merging upstream
